Regulog NrdR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	1	1
Rhizobium sp. NGR234	1	1
Rhizobium leguminosarum bv. viciae 3841	5	2
Rhizobium etli CFN 42	5	2
Agrobacterium tumefaciens str. C58 (Cereon)	5	2
Mesorhizobium sp. BNC1	2	2
Mesorhizobium loti MAFF303099	1	1
Brucella melitensis 16M	5	2
Bartonella quintana str. Toulouse	4	1
Rhodopseudomonas palustris CGA009	1	1
Bradyrhizobium japonicum USDA 110	3	2
Bradyrhizobium sp. BTAi1	1	1
Nitrobacter winogradskyi Nb-255	3	2
Azorhizobium caulinodans ORS 571	1	1
Xanthobacter autotrophicus Py2	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
nrdH	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -508 score = 4.96609 sequence = GTACCATATCTAGTGT Gene: RL4261: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	* Rhizobium etli CFN 42 Site: position = -486 score = 5.07095 sequence = GTACTATATCTAGTGT Gene: RHE_CH03718: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -534 score = 5.0023 sequence = ATACTATATGTGGTGT Gene: Atu0068: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	* Brucella melitensis 16M Site: position = -555 score = 4.95902 sequence = CTACCATATCTTGTGT Gene: BMEII0932: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	* Bartonella quintana str. Toulouse Site: position = -523 score = 5.35829 sequence = ATACTATATATAGTAT Gene: BQ01800: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4260: Ribonucleotide reductase stimulatory protein NrdI	Rhizobium etli CFN 42 Gene: RHE_CH03717: Ribonucleotide reductase stimulatory protein NrdI	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0069: Ribonucleotide reductase stimulatory protein NrdI	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEII0931: Ribonucleotide reductase stimulatory protein NrdI	Bartonella quintana str. Toulouse Gene: BQ01810: Ribonucleotide reductase stimulatory protein NrdI	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Ribonucleotide reductase stimulatory protein NrdI
nrdE	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4259: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Rhizobium etli CFN 42 Gene: RHE_CH03716: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0070: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEII0930: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Bartonella quintana str. Toulouse Gene: BQ01820: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdF	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4258: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Rhizobium etli CFN 42 Gene: RHE_CH03715: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0071: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEII0929: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Bartonella quintana str. Toulouse Gene: BQ01830: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)

CRON 2.
nrdA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -310 score = 3.92744 sequence = CTACTAAATATAGCCC Gene: Meso_2703: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	* Bradyrhizobium japonicum USDA 110 Site: position = -20 score = 3.25101 sequence = TTCGCATATATGGTGG Site: position = -51 score = 4.50982 sequence = CTTCTATATGTGGTGT Gene: bll0007: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Bradyrhizobium sp. BTAi1	* Nitrobacter winogradskyi Nb-255 Site: position = -337 score = 4.81346 sequence = CTACTAAATATAGTGG Gene: Nwi_2888: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_2702: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: bll0006: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2887: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)

CRON 3.
nrdJ	* Sinorhizobium meliloti 1021 Site: position = -130 score = 4.45838 sequence = TCACAAGATACAGGAT Site: position = -407 score = 4.84824 sequence = ACACAAGATATAGCGC Site: position = -161 score = 5.49507 sequence = ATACTATATTTAGTGT Gene: SMc01237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Rhizobium sp. NGR234 Site: position = -155 score = 5.49507 sequence = ATACTATATTTAGTGT Site: position = -400 score = 4.84824 sequence = ACACAAGATATAGCGC Site: position = -124 score = 4.24231 sequence = CCACAAGATACTGGAG Gene: NGR_c15550: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -175 score = 5.49507 sequence = ATACTATATTTAGTGT Site: position = -144 score = 4.43502 sequence = CCACAAGATACAGGAA Site: position = -420 score = 4.70089 sequence = CCACAACATGTTGTGG Gene: RL1945: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Rhizobium etli CFN 42 Site: position = -411 score = 4.70089 sequence = CCACAACATGTTGTGG Site: position = -167 score = 5.30133 sequence = ATACTATATTTAGCGT Site: position = -136 score = 4.43502 sequence = CCACAAGATACAGGAA Gene: RHE_CH01753: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -416 score = 4.96956 sequence = ACACAATATCTTGTGG Site: position = -296 score = 4.57009 sequence = TCTCCATATTTAGCGT Site: position = -170 score = 5.30231 sequence = ACACTATATATAGTAG Site: position = -137 score = 4.16909 sequence = ACACGAGATACAGGGA Gene: Atu1733: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Mesorhizobium sp. BNC1 Site: position = -530 score = 5.23431 sequence = ACACAATATCTAGCGT Site: position = -284 score = 4.72699 sequence = ATGCTATATTTAGCGT Gene: Meso_1332: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Mesorhizobium loti MAFF303099 Site: position = -360 score = 4.64023 sequence = ACACAAGATGTTGGGG Site: position = -113 score = 5.49507 sequence = ATACTATATTTAGTGT Gene: mll0136: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Brucella melitensis 16M Site: position = -537 score = 4.94739 sequence = GCACAATATCTAGCGT Site: position = -279 score = 5.28103 sequence = ACACAAGATTTAGTAT Site: position = -31 score = 4.5173 sequence = CTACTATATATAGAAC Gene: BMEI0943: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -409 score = 5.0581 sequence = CCACCACATTTAGTAT Gene: RPA2977: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Bradyrhizobium japonicum USDA 110 Site: position = -492 score = 5.37659 sequence = CCACCATATTTAGTAT Gene: bll4274: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Bradyrhizobium sp. BTAi1 Site: position = -320 score = 4.56717 sequence = CCACTAGATGTGGGGG Site: position = -546 score = 4.92439 sequence = CCCCCATATTTAGTGT Gene: BBta_4237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Nitrobacter winogradskyi Nb-255 Site: position = -532 score = 5.49873 sequence = CCACCATATTTAGTGT Gene: Nwi_1571: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Azorhizobium caulinodans ORS 571 Site: position = -262 score = 5.07454 sequence = TCACTATATTTAGTAG Gene: AZC_1268: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Xanthobacter autotrophicus Py2 Site: position = -273 score = 5.28921 sequence = CCACCATATGTAGTAT Gene: Xaut_4674: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --