Regulog NrdR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 1 | 1 |
| Rhizobium sp. NGR234 | 1 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 5 | 2 |
| Rhizobium etli CFN 42 | 5 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 5 | 2 |
| Mesorhizobium sp. BNC1 | 2 | 2 |
| Mesorhizobium loti MAFF303099 | 1 | 1 |
| Brucella melitensis 16M | 5 | 2 |
| Bartonella quintana str. Toulouse | 4 | 1 |
| Rhodopseudomonas palustris CGA009 | 1 | 1 |
| Bradyrhizobium japonicum USDA 110 | 3 | 2 |
| Bradyrhizobium sp. BTAi1 | 1 | 1 |
| Nitrobacter winogradskyi Nb-255 | 3 | 2 |
| Azorhizobium caulinodans ORS 571 | 1 | 1 |
| Xanthobacter autotrophicus Py2 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| nrdH |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -508 score = 4.96609 sequence = GTACCATATCTAGTGT Gene: RL4261: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Rhizobium etli CFN 42 Site: position = -486 score = 5.07095 sequence = GTACTATATCTAGTGT Gene: RHE_CH03718: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -534 score = 5.0023 sequence = ATACTATATGTGGTGT Gene: Atu0068: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Brucella melitensis 16M Site: position = -555 score = 4.95902 sequence = CTACCATATCTTGTGT Gene: BMEII0932: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Bartonella quintana str. Toulouse Site: position = -523 score = 5.35829 sequence = ATACTATATATAGTAT Gene: BQ01800: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
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Gene: RL4260: Ribonucleotide reductase stimulatory protein NrdI |
Gene: RHE_CH03717: Ribonucleotide reductase stimulatory protein NrdI |
Gene: Atu0069: Ribonucleotide reductase stimulatory protein NrdI |
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Gene: BMEII0931: Ribonucleotide reductase stimulatory protein NrdI |
Gene: BQ01810: Ribonucleotide reductase stimulatory protein NrdI |
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Ribonucleotide reductase stimulatory protein NrdI |
| nrdE |
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Gene: RL4259: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: RHE_CH03716: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Atu0070: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: BMEII0930: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BQ01820: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
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Gene: RL4258: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RHE_CH03715: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Atu0071: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BMEII0929: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BQ01830: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||||||||
| nrdA |
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Mesorhizobium sp. BNC1 Site: position = -310 score = 3.92744 sequence = CTACTAAATATAGCCC Gene: Meso_2703: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Bradyrhizobium japonicum USDA 110 Site: position = -20 score = 3.25101 sequence = TTCGCATATATGGTGG Site: position = -51 score = 4.50982 sequence = CTTCTATATGTGGTGT Gene: bll0007: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Nitrobacter winogradskyi Nb-255 Site: position = -337 score = 4.81346 sequence = CTACTAAATATAGTGG Gene: Nwi_2888: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
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Gene: Meso_2702: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: bll0006: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Nwi_2887: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 3. | ||||||||||||||||
| nrdJ |
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Sinorhizobium meliloti 1021 Site: position = -130 score = 4.45838 sequence = TCACAAGATACAGGAT Site: position = -407 score = 4.84824 sequence = ACACAAGATATAGCGC Site: position = -161 score = 5.49507 sequence = ATACTATATTTAGTGT Gene: SMc01237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Rhizobium sp. NGR234 Site: position = -155 score = 5.49507 sequence = ATACTATATTTAGTGT Site: position = -400 score = 4.84824 sequence = ACACAAGATATAGCGC Site: position = -124 score = 4.24231 sequence = CCACAAGATACTGGAG Gene: NGR_c15550: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -175 score = 5.49507 sequence = ATACTATATTTAGTGT Site: position = -144 score = 4.43502 sequence = CCACAAGATACAGGAA Site: position = -420 score = 4.70089 sequence = CCACAACATGTTGTGG Gene: RL1945: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Rhizobium etli CFN 42 Site: position = -411 score = 4.70089 sequence = CCACAACATGTTGTGG Site: position = -167 score = 5.30133 sequence = ATACTATATTTAGCGT Site: position = -136 score = 4.43502 sequence = CCACAAGATACAGGAA Gene: RHE_CH01753: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -416 score = 4.96956 sequence = ACACAATATCTTGTGG Site: position = -296 score = 4.57009 sequence = TCTCCATATTTAGCGT Site: position = -170 score = 5.30231 sequence = ACACTATATATAGTAG Site: position = -137 score = 4.16909 sequence = ACACGAGATACAGGGA Gene: Atu1733: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Mesorhizobium sp. BNC1 Site: position = -530 score = 5.23431 sequence = ACACAATATCTAGCGT Site: position = -284 score = 4.72699 sequence = ATGCTATATTTAGCGT Gene: Meso_1332: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Mesorhizobium loti MAFF303099 Site: position = -360 score = 4.64023 sequence = ACACAAGATGTTGGGG Site: position = -113 score = 5.49507 sequence = ATACTATATTTAGTGT Gene: mll0136: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Brucella melitensis 16M Site: position = -537 score = 4.94739 sequence = GCACAATATCTAGCGT Site: position = -279 score = 5.28103 sequence = ACACAAGATTTAGTAT Site: position = -31 score = 4.5173 sequence = CTACTATATATAGAAC Gene: BMEI0943: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Rhodopseudomonas palustris CGA009 Site: position = -409 score = 5.0581 sequence = CCACCACATTTAGTAT Gene: RPA2977: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Bradyrhizobium japonicum USDA 110 Site: position = -492 score = 5.37659 sequence = CCACCATATTTAGTAT Gene: bll4274: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Bradyrhizobium sp. BTAi1 Site: position = -320 score = 4.56717 sequence = CCACTAGATGTGGGGG Site: position = -546 score = 4.92439 sequence = CCCCCATATTTAGTGT Gene: BBta_4237: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Nitrobacter winogradskyi Nb-255 Site: position = -532 score = 5.49873 sequence = CCACCATATTTAGTGT Gene: Nwi_1571: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Azorhizobium caulinodans ORS 571 Site: position = -262 score = 5.07454 sequence = TCACTATATTTAGTAG Gene: AZC_1268: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Xanthobacter autotrophicus Py2 Site: position = -273 score = 5.28921 sequence = CCACCATATGTAGTAT Gene: Xaut_4674: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |