Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 28 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 2 1
Acidovorax sp. JS42 5 2
Comamonas testosteroni KF-1 2 1
Delftia acidovorans SPH-1 2 1
Polaromonas naphthalenivorans CJ2 2 1
Polaromonas sp. JS666 2 1
Rhodoferax ferrireducens DSM 15236 5 2
Variovorax paradoxus S110 2 1
Verminephrobacter eiseniae EF01-2 2 1
Methylibium petroleiphilum PM1 4 2
Leptothrix cholodnii SP-6 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdD
 
Acidovorax avenae subsp. citrulli AAC00-1
*
Acidovorax sp. JS42

Site:
position = -61
score = 5.36713
sequence = AAACTACCTATAGTGT

Site:
position = -29
score = 5.81621
sequence = ACACTATATGTAGTGT

Gene: Ajs_0087: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -30
score = 5.86594
sequence = ACACTACCTATAGTGT

Site:
position = -61
score = 5.17976
sequence = ACGCTACATTTAGTGG

Gene: Rfer_0368: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ajs_0086
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_0086: hypothetical protein
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0369: hypothetical protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
*
Methylibium petroleiphilum PM1

Site:
position = -1880
score = 5.60555
sequence = ACACTACCGGTAGTGT

Site:
position = -1848
score = 4.40739
sequence = CCACTACCGGTAGAGC

Gene: Mpe_A1693: hypothetical protein
 
Leptothrix cholodnii SP-6
hypothetical protein
nrdG
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_0085: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0370: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1692: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Leptothrix cholodnii SP-6
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
CRON 2.
nrdA
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -128
score = 5.78221
sequence = ACACTACATGTAGTGC

Site:
position = -96
score = 4.99702
sequence = CCACTACCTATAGCGT

Gene: Aave_0864: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Acidovorax sp. JS42

Site:
position = -103
score = 5.85784
sequence = ACACTAGATATAGTGT

Site:
position = -135
score = 5.27415
sequence = ACACTACCCCTAGTGT

Gene: Ajs_3632: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Comamonas testosteroni KF-1

Site:
position = -138
score = 5.19961
sequence = ACCCCATATCTAGTGT

Site:
position = -169
score = 5.60555
sequence = ACACTACCGGTAGTGT

Gene: CtesDRAFT_3006: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Delftia acidovorans SPH-1

Site:
position = -172
score = 5.53814
sequence = ACACTACAGGTAGTGC

Site:
position = -141
score = 5.40635
sequence = ACACCATATCTAGTGT

Gene: Daci_1501: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -159
score = 5.31875
sequence = GCACTAGCTGTAGTGC

Site:
position = -190
score = 5.60793
sequence = ACACTACCTGTAGTGG

Gene: Pnap_3385: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Polaromonas sp. JS666

Site:
position = -215
score = 5.47383
sequence = ACACTACAGGTAGTGG

Site:
position = -183
score = 5.22765
sequence = ACCCTAGGTATAGTGT

Gene: Bpro_1107: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -109
score = 5.25569
sequence = CCCCTATATATAGTGT

Site:
position = -140
score = 4.99376
sequence = CCACTACCGGTAGTGG

Gene: Rfer_3347: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Variovorax paradoxus S110

Site:
position = -98
score = 5.65111
sequence = ACCCTAGATATAGTGT

Site:
position = -130
score = 5.39649
sequence = ACGCTACATCTAGTGG

Gene: Vapar_0956: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -115
score = 5.53735
sequence = ACACCATATATAGTGT

Site:
position = -147
score = 5.71552
sequence = ACACTACAGGTAGTGT

Gene: Veis_1496: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Methylibium petroleiphilum PM1

Site:
position = -294
score = 5.41569
sequence = GCGCTAGATATAGTGT

Site:
position = -325
score = 5.5918
sequence = ACGCTACATATAGTGC

Gene: Mpe_A3214: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Leptothrix cholodnii SP-6

Site:
position = -322
score = 5.19543
sequence = ACACTAGCGCTAGTGC

Site:
position = -291
score = 5.42872
sequence = GCACTAGATGTAGTGC

Gene: Lcho_0382: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0863: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Acidovorax sp. JS42

Gene: Ajs_3633: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3007: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Delftia acidovorans SPH-1

Gene: Daci_1500: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3386: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Polaromonas sp. JS666

Gene: Bpro_1106: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3348: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Variovorax paradoxus S110

Gene: Vapar_0955: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1495: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3213: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Leptothrix cholodnii SP-6

Gene: Lcho_0383: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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