Regulog NrdR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 2 | 1 |
| Acidovorax sp. JS42 | 5 | 2 |
| Comamonas testosteroni KF-1 | 2 | 1 |
| Delftia acidovorans SPH-1 | 2 | 1 |
| Polaromonas naphthalenivorans CJ2 | 2 | 1 |
| Polaromonas sp. JS666 | 2 | 1 |
| Rhodoferax ferrireducens DSM 15236 | 5 | 2 |
| Variovorax paradoxus S110 | 2 | 1 |
| Verminephrobacter eiseniae EF01-2 | 2 | 1 |
| Methylibium petroleiphilum PM1 | 4 | 2 |
| Leptothrix cholodnii SP-6 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| nrdD |
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Acidovorax sp. JS42 Site: position = -61 score = 5.36713 sequence = AAACTACCTATAGTGT Site: position = -29 score = 5.81621 sequence = ACACTATATGTAGTGT Gene: Ajs_0087: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Rhodoferax ferrireducens DSM 15236 Site: position = -30 score = 5.86594 sequence = ACACTACCTATAGTGT Site: position = -61 score = 5.17976 sequence = ACGCTACATTTAGTGG Gene: Rfer_0368: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| Ajs_0086 |
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Gene: Ajs_0086: hypothetical protein |
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Gene: Rfer_0369: hypothetical protein |
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Methylibium petroleiphilum PM1 Site: position = -1880 score = 5.60555 sequence = ACACTACCGGTAGTGT Site: position = -1848 score = 4.40739 sequence = CCACTACCGGTAGAGC Gene: Mpe_A1693: hypothetical protein |
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hypothetical protein |
| nrdG |
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Gene: Ajs_0085: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: Rfer_0370: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: Mpe_A1692: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 2. | ||||||||||||
| nrdA |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -128 score = 5.78221 sequence = ACACTACATGTAGTGC Site: position = -96 score = 4.99702 sequence = CCACTACCTATAGCGT Gene: Aave_0864: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Acidovorax sp. JS42 Site: position = -103 score = 5.85784 sequence = ACACTAGATATAGTGT Site: position = -135 score = 5.27415 sequence = ACACTACCCCTAGTGT Gene: Ajs_3632: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Comamonas testosteroni KF-1 Site: position = -138 score = 5.19961 sequence = ACCCCATATCTAGTGT Site: position = -169 score = 5.60555 sequence = ACACTACCGGTAGTGT Gene: CtesDRAFT_3006: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Delftia acidovorans SPH-1 Site: position = -172 score = 5.53814 sequence = ACACTACAGGTAGTGC Site: position = -141 score = 5.40635 sequence = ACACCATATCTAGTGT Gene: Daci_1501: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Polaromonas naphthalenivorans CJ2 Site: position = -159 score = 5.31875 sequence = GCACTAGCTGTAGTGC Site: position = -190 score = 5.60793 sequence = ACACTACCTGTAGTGG Gene: Pnap_3385: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Polaromonas sp. JS666 Site: position = -215 score = 5.47383 sequence = ACACTACAGGTAGTGG Site: position = -183 score = 5.22765 sequence = ACCCTAGGTATAGTGT Gene: Bpro_1107: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Rhodoferax ferrireducens DSM 15236 Site: position = -109 score = 5.25569 sequence = CCCCTATATATAGTGT Site: position = -140 score = 4.99376 sequence = CCACTACCGGTAGTGG Gene: Rfer_3347: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Variovorax paradoxus S110 Site: position = -98 score = 5.65111 sequence = ACCCTAGATATAGTGT Site: position = -130 score = 5.39649 sequence = ACGCTACATCTAGTGG Gene: Vapar_0956: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Verminephrobacter eiseniae EF01-2 Site: position = -115 score = 5.53735 sequence = ACACCATATATAGTGT Site: position = -147 score = 5.71552 sequence = ACACTACAGGTAGTGT Gene: Veis_1496: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Methylibium petroleiphilum PM1 Site: position = -294 score = 5.41569 sequence = GCGCTAGATATAGTGT Site: position = -325 score = 5.5918 sequence = ACGCTACATATAGTGC Gene: Mpe_A3214: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Leptothrix cholodnii SP-6 Site: position = -322 score = 5.19543 sequence = ACACTAGCGCTAGTGC Site: position = -291 score = 5.42872 sequence = GCACTAGATGTAGTGC Gene: Lcho_0382: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: Aave_0863: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Ajs_3633: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CtesDRAFT_3007: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Daci_1500: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Pnap_3386: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bpro_1106: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Rfer_3348: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Vapar_0955: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Veis_1495: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Mpe_A3213: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Lcho_0383: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |