Regulog NrdR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | 4 | 1 |
| Xanthomonas axonopodis pv. citri str. 306 | 4 | 1 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 4 | 1 |
| Stenotrophomonas maltophilia K279a | 6 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| nrdA1 |
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|
|
*
Stenotrophomonas maltophilia K279a Site: position = -274 score = 5.78798 sequence = CCCCACTATCTTGTGG Gene: Smlt0247: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB1 |
|
|
|
Gene: Smlt0248: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | |||||
| nrdA |
*
Xylella fastidiosa 9a5c Site: position = -391 score = 5.51768 sequence = CCCCATTATCTTGTGG Site: position = -423 score = 5.01407 sequence = TCACAGCATTTTGTGT Gene: XF1196: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -407 score = 4.15844 sequence = TTCCTACATTTGGTGT Site: position = -375 score = 5.63013 sequence = CCCCACTATCTTGGGG Gene: XAC4075: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -414 score = 4.56872 sequence = TTCCCACATTATGTGT Site: position = -382 score = 5.63013 sequence = CCCCACTATCTTGGGG Gene: XCC3986: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Stenotrophomonas maltophilia K279a Site: position = -160 score = 5.48311 sequence = CCCCACTATGTTGTGG Site: position = -192 score = 4.82663 sequence = TTACCGCATCTTGTGT Gene: Smlt2842: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: XF1197: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: XAC4074: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: XCC3985: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Smlt2841: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| XF1198 |
Gene: XF1198: putative flavodoxin |
Gene: XAC4073: putative flavodoxin |
Gene: XCC3984: putative flavodoxin |
Gene: Smlt2840: putative flavodoxin |
putative flavodoxin |
| trxA |
Gene: XF1199: Thioredoxin |
Gene: XAC4072: Thioredoxin |
Gene: XCC3983: Thioredoxin |
Gene: Smlt2839: Thioredoxin |
Thioredoxin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |