Regulog NrdR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 6 | 3 |
| Psychromonas sp. CNPT3 | 4 | 2 |
| Moritella sp. PE36 | 5 | 2 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 7 | 3 |
| Aeromonas salmonicida subsp. salmonicida A449 | 8 | 3 |
| Tolumonas auensis DSM 9187 | 4 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| nrdA |
*
Psychromonas ingrahamii 37 Site: position = -90 score = 5.56065 sequence = ACACAATATGTTGTGT Site: position = -122 score = 4.7354 sequence = AAGCTTTATCTTGTGT Gene: Ping_1112: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: PCNPT3_04466: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Moritella sp. PE36 Site: position = -117 score = 4.71561 sequence = TCCCTCTATCTTGTAT Site: position = -85 score = 5.49714 sequence = ACACTACATCTTGTGT Gene: PE36_09743: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -79 score = 5.35804 sequence = ACACTATATCTTGTGA Site: position = -110 score = 4.17242 sequence = CCTCACTATCTTGTAG Gene: AHA_2333: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -146 score = 4.17242 sequence = CCTCACTATCTTGTAG Site: position = -115 score = 5.35804 sequence = ACACTATATCTTGTGA Gene: ASA_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Tolumonas auensis DSM 9187 Site: position = -75 score = 4.49211 sequence = ATTCTTTATGTTGTAT Site: position = -43 score = 5.25638 sequence = GCACTACATATTGTGT Gene: Tola_1429: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
*
Psychromonas ingrahamii 37 Site: position = -318 score = 5.70363 sequence = ACACTATATCTTGTGT Gene: Ping_1109: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PCNPT3_04461: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PE36_09738: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: AHA_2334: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: ASA_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Tola_1428: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| yfaE |
Gene: Ping_1108: Ferredoxin |
Gene: PCNPT3_04456: Ferredoxin |
Gene: PE36_09733: Ferredoxin |
Gene: AHA_2335: Ferredoxin |
Gene: ASA_1944: Ferredoxin |
Gene: Tola_1427: Ferredoxin |
Ferredoxin |
| CRON 2. | |||||||
| nrdJa |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -96 score = 5.12425 sequence = ATACTACATATAGTGT Gene: AHA_0870: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -95 score = 5.47372 sequence = ATACTATATATTGTGT Site: position = -64 score = 4.46683 sequence = TCACTATTAGTTGTGT Gene: ASA_3420: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
|
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| nrdJb |
|
|
|
Gene: AHA_0871: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
Gene: ASA_3419: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
|
Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
| CRON 3. | |||||||
| nrdD |
*2
Psychromonas ingrahamii 37 Gene: Ping_0740: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Site: position = -91 score = 5.19681 sequence = CCACTAGATGTTGTGT Gene: Ping_0739: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) (fragment) |
*
Psychromonas sp. CNPT3 Site: position = -70 score = 4.95901 sequence = TATCTATATGTAGTGT Site: position = -38 score = 4.88633 sequence = CCACAAGATGTAGTGT Gene: PCNPT3_10895: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Moritella sp. PE36 Site: position = -85 score = 5.58124 sequence = ACACTACATATTGTGT Site: position = -54 score = 5.05096 sequence = CACCTATATATAGTGT Gene: PE36_17942: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -202 score = 4.11913 sequence = ACACCACATATAGGGC Site: position = -171 score = 5.2974 sequence = TCCCTATATGTTGTGT Gene: AHA_1231: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -171 score = 5.13437 sequence = CACCTATATGTTGTGT Site: position = -202 score = 4.27246 sequence = ACACCACATATAGGGA Gene: ASA_1222: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Tolumonas auensis DSM 9187 Site: position = -96 score = 4.09183 sequence = TCGCAATATATAGTTA Site: position = -65 score = 4.86513 sequence = GAACTATATATAGTAT Gene: Tola_0418: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| ASA_1223 |
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|
|
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Gene: ASA_1223: hypothetical protein |
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hypothetical protein |
| nrdG |
Gene: Ping_0741: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: PCNPT3_10890: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: PE36_17947: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: AHA_1232: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: ASA_1224: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Tola_0381: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 4. | |||||||
| nrdB2 |
|
*
Psychromonas sp. CNPT3 Site: position = -76 score = 5.62022 sequence = ACACAATATATTGTGT Gene: PCNPT3_00476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| nrdA2 |
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Gene: PCNPT3_00471: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |