Regulog NrdR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37	6	3
Psychromonas sp. CNPT3	4	2
Moritella sp. PE36	5	2
Aeromonas hydrophila subsp. hydrophila ATCC 7966	7	3
Aeromonas salmonicida subsp. salmonicida A449	8	3
Tolumonas auensis DSM 9187	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
nrdA	* Psychromonas ingrahamii 37 Site: position = -90 score = 5.56065 sequence = ACACAATATGTTGTGT Site: position = -122 score = 4.7354 sequence = AAGCTTTATCTTGTGT Gene: Ping_1112: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Psychromonas sp. CNPT3 Gene: PCNPT3_04466: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Moritella sp. PE36 Site: position = -117 score = 4.71561 sequence = TCCCTCTATCTTGTAT Site: position = -85 score = 5.49714 sequence = ACACTACATCTTGTGT Gene: PE36_09743: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -79 score = 5.35804 sequence = ACACTATATCTTGTGA Site: position = -110 score = 4.17242 sequence = CCTCACTATCTTGTAG Gene: AHA_2333: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -146 score = 4.17242 sequence = CCTCACTATCTTGTAG Site: position = -115 score = 5.35804 sequence = ACACTATATCTTGTGA Gene: ASA_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Tolumonas auensis DSM 9187 Site: position = -75 score = 4.49211 sequence = ATTCTTTATGTTGTAT Site: position = -43 score = 5.25638 sequence = GCACTACATATTGTGT Gene: Tola_1429: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	* Psychromonas ingrahamii 37 Site: position = -318 score = 5.70363 sequence = ACACTATATCTTGTGT Gene: Ping_1109: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Psychromonas sp. CNPT3 Gene: PCNPT3_04461: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Moritella sp. PE36 Gene: PE36_09738: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2334: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Tolumonas auensis DSM 9187 Gene: Tola_1428: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE	Psychromonas ingrahamii 37 Gene: Ping_1108: Ferredoxin	Psychromonas sp. CNPT3 Gene: PCNPT3_04456: Ferredoxin	Moritella sp. PE36 Gene: PE36_09733: Ferredoxin	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2335: Ferredoxin	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1944: Ferredoxin	Tolumonas auensis DSM 9187 Gene: Tola_1427: Ferredoxin	Ferredoxin

CRON 2.
nrdJa	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -96 score = 5.12425 sequence = ATACTACATATAGTGT Gene: AHA_0870: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -95 score = 5.47372 sequence = ATACTATATATTGTGT Site: position = -64 score = 4.46683 sequence = TCACTATTAGTTGTGT Gene: ASA_3420: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Tolumonas auensis DSM 9187	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
nrdJb	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0871: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3419: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Tolumonas auensis DSM 9187	Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)

CRON 3.
nrdD	2 Psychromonas ingrahamii 37* Gene: Ping_0740: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Site: position = -91 score = 5.19681 sequence = CCACTAGATGTTGTGT Gene: Ping_0739: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) (fragment)	* Psychromonas sp. CNPT3 Site: position = -70 score = 4.95901 sequence = TATCTATATGTAGTGT Site: position = -38 score = 4.88633 sequence = CCACAAGATGTAGTGT Gene: PCNPT3_10895: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Moritella sp. PE36 Site: position = -85 score = 5.58124 sequence = ACACTACATATTGTGT Site: position = -54 score = 5.05096 sequence = CACCTATATATAGTGT Gene: PE36_17942: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -202 score = 4.11913 sequence = ACACCACATATAGGGC Site: position = -171 score = 5.2974 sequence = TCCCTATATGTTGTGT Gene: AHA_1231: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -171 score = 5.13437 sequence = CACCTATATGTTGTGT Site: position = -202 score = 4.27246 sequence = ACACCACATATAGGGA Gene: ASA_1222: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Tolumonas auensis DSM 9187 Site: position = -96 score = 4.09183 sequence = TCGCAATATATAGTTA Site: position = -65 score = 4.86513 sequence = GAACTATATATAGTAT Gene: Tola_0418: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
ASA_1223	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1223: hypothetical protein	Tolumonas auensis DSM 9187	hypothetical protein
nrdG	Psychromonas ingrahamii 37 Gene: Ping_0741: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Psychromonas sp. CNPT3 Gene: PCNPT3_10890: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Moritella sp. PE36 Gene: PE36_17947: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1232: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1224: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Tolumonas auensis DSM 9187 Gene: Tola_0381: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

CRON 4.
nrdB2	Psychromonas ingrahamii 37	* Psychromonas sp. CNPT3 Site: position = -76 score = 5.62022 sequence = ACACAATATATTGTGT Gene: PCNPT3_00476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
nrdA2	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3 Gene: PCNPT3_00471: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --