Regulog NrdR - Pasteurellales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Pasteurellales
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Haemophilus influenzae Rd KW20 | 3 | 2 |
| Aggregatibacter aphrophilus NJ8700 | 2 | 2 |
| Pasteurella multocida subsp. multocida str. Pm70 | 3 | 2 |
| Mannheimia succiniciproducens MBEL55E | 3 | 2 |
| Actinobacillus succinogenes 130Z | 4 | 2 |
| Haemophilus somnus 2336 | 3 | 2 |
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | 6 | 3 |
| Haemophilus ducreyi 35000HP | 4 | 2 |
| Haemophilus parasuis SH0165 | 4 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nrdA |
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Haemophilus influenzae Rd KW20 Site: position = -56 score = 5.62711 sequence = ACACTATATCTTGTGT Site: position = -87 score = 5.1182 sequence = ACACATTATCTTGTGG Gene: HI1659: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Aggregatibacter aphrophilus NJ8700 Site: position = -50 score = 4.95587 sequence = CAACTATATGTTGTGT Site: position = -81 score = 4.84439 sequence = ACACATTATCTTGTGC Gene: NT05HA_0693: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Pasteurella multocida subsp. multocida str. Pm70 Site: position = -44 score = 5.62711 sequence = ACACAATATCTTGTGT Site: position = -75 score = 4.64632 sequence = GCACATTATCTTGTAT Gene: PM0717: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Mannheimia succiniciproducens MBEL55E Site: position = -41 score = 4.51764 sequence = ACCCACTATCTTGTAG Site: position = -10 score = 4.88572 sequence = CTTCTATATATTGTGT Gene: MS0992: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Actinobacillus succinogenes 130Z Site: position = -33 score = 5.24402 sequence = AATCTATATATTGTGT Site: position = -64 score = 4.51764 sequence = ACCCACTATCTTGTAG Gene: Asuc_1466: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Haemophilus somnus 2336 Site: position = -47 score = 5.25623 sequence = TAACTATATCTTGTGT Site: position = -78 score = 5.01245 sequence = ACACATTATCTTGTAG Gene: HSM_0366: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -78 score = 5.36189 sequence = AAACAATATCTTGTAT Site: position = -47 score = 5.01447 sequence = CCACAAGATATAGTGG Gene: APP7_1045: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Haemophilus ducreyi 35000HP Site: position = -78 score = 4.55177 sequence = AAACCATATCTTGTAC Site: position = -47 score = 5.10215 sequence = CCACAACATATAGTGG Gene: HD1731: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
|
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: HI1660: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: NT05HA_0691: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PM0719: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: MS0968: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Asuc_1480: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: HSM_1436: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: APP7_1046: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: HD1732: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||
| nrdB |
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Gene: NT05HA_0828: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -149 score = 4.32025 sequence = ACACTAGATATGGGTT Site: position = -180 score = 5.15901 sequence = ATACAATATCTAGTAT Gene: APP7_0149: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
|
*
Haemophilus parasuis SH0165 Site: position = -203 score = 5.4157 sequence = CCACTATATCTTGTGT Site: position = -172 score = 5.08204 sequence = ACACAAGATATAGTTT Gene: HAPS_1341: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| nrdA |
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Gene: NT05HA_0827: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: APP7_0150: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: HAPS_1342: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| CRON 3. | ||||||||||
| nrdD |
*
Haemophilus influenzae Rd KW20 Site: position = -55 score = 4.33657 sequence = GATCTATATATAGTGC Site: position = -87 score = 5.47531 sequence = ACACTACATATTGTGT Site: position = -23 score = 5.14133 sequence = ACACTATATATTGGAG Gene: HI0075: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -54 score = 4.87085 sequence = TATCTATATATAGTAT Site: position = -86 score = 5.32675 sequence = ACACTATATGTTGTGT Gene: NT05HA_0064: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Pasteurella multocida subsp. multocida str. Pm70 Site: position = -56 score = 5.18157 sequence = TAACTATATATAGTAT Site: position = -87 score = 5.52136 sequence = ACACTATATCTTGTGG Gene: PM0940: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Mannheimia succiniciproducens MBEL55E Site: position = -22 score = 4.63558 sequence = ACACTACATATAGATT Site: position = -54 score = 4.82972 sequence = TTTCTATATATAGTGT Gene: MS0633: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Actinobacillus succinogenes 130Z Site: position = -139 score = 5.52136 sequence = ACACAATATCTTGTGG Site: position = -54 score = 4.61038 sequence = GATCTATATATAGTAT Site: position = -22 score = 4.70261 sequence = ACACTACATATAGGTG Gene: Asuc_1407: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Haemophilus somnus 2336 Site: position = -25 score = 4.2908 sequence = ACGCAACATATAGGTT Site: position = -56 score = 4.96187 sequence = TAACAATATATAGTGA Site: position = -87 score = 5.55244 sequence = ACACAATATATAGTGG Gene: HSM_0537: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Gene: APP7_0166: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Gene: HD0393: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Gene: HAPS_1167: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| Asuc_1408 |
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Gene: Asuc_1408: hypothetical protein |
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hypothetical protein |
| nrdG |
Gene: HI1155: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: NT05HA_0062: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: PM0941: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: MS0632: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Asuc_1409: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: HSM_0538: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -30 score = 4.98811 sequence = ACACAACATATAGTAA Site: position = -62 score = 5.50278 sequence = TCACAATATATTGTGT Gene: APP7_0167: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Haemophilus ducreyi 35000HP Site: position = -30 score = 4.85612 sequence = TAACTATATATAGTAA Site: position = -62 score = 5.71419 sequence = ACACAATATATTGTGT Gene: HD0394: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Haemophilus parasuis SH0165 Site: position = -55 score = 4.95755 sequence = CTACTACATATTGTGT Site: position = -23 score = 5.01447 sequence = CCACAAGATATAGTGG Gene: HAPS_1168: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |