Regulog NrtR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrtR
Regulation mode:	repressor
Biological process:	NAD biosynthesis
Effector:	Adenosine diphosphate ribose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - NrtR
By TF family - NrtR
By effector - Adenosine diphosphate ribose
By pathway - NAD biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	5	2
Pseudomonas entomophila L48	3	2
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas fluorescens Pf-5	6	2
Pseudomonas mendocina ymp	4	2
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
nadD	* Pseudomonas aeruginosa PAO1 Site: position = -69 score = 5.42041 sequence = ATAATTCATCACGTGAAATAA Gene: PA4917: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -35 score = 5.41151 sequence = AAGGTACACGTCATGTACCAA Site: position = -156 score = 5.46795 sequence = AAAGTATATGTCATGTACTTT Gene: PFL_2465: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family
nrtR	Pseudomonas aeruginosa PAO1 Gene: PA4916: Nudix-related transcriptional regulator NrtR	* Pseudomonas entomophila L48 Site: position = -113 score = 5.3333 sequence = ATAATTCACCTGGTGCATTAA Gene: PSEEN2060: Nudix-related transcriptional regulator NrtR	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_2464: Nudix-related transcriptional regulator NrtR	* Pseudomonas mendocina ymp Site: position = -109 score = 5.25428 sequence = ATATTTCATCTGATGAAATAT Gene: Pmen_1413: Nudix-related transcriptional regulator NrtR	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nudix-related transcriptional regulator NrtR
PFL_2463	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_2463: ADP-ribose pyrophosphatase (EC 3.6.1.13)	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	ADP-ribose pyrophosphatase (EC 3.6.1.13)

CRON 2.
pncA	* Pseudomonas aeruginosa PAO1 Site: position = -61 score = 5.42041 sequence = TTATTTCACGTGATGAATTAT Gene: PA4918: Nicotinamidase (EC 3.5.1.19)	* Pseudomonas entomophila L48 Site: position = -51 score = 5.3333 sequence = TTAATGCACCAGGTGAATTAT Gene: PSEEN2059: Nicotinamidase (EC 3.5.1.19)	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -48 score = 5.46795 sequence = AAAGTACATGACATATACTTT Site: position = -169 score = 5.41151 sequence = TTGGTACATGACGTGTACCTT Gene: PFL_2466: Nicotinamidase (EC 3.5.1.19)	* Pseudomonas mendocina ymp Site: position = -52 score = 5.25428 sequence = ATATTTCATCAGATGAAATAT Gene: Pmen_1412: Nicotinamidase (EC 3.5.1.19)	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nicotinamidase (EC 3.5.1.19)
pncB	Pseudomonas aeruginosa PAO1 Gene: PA4919: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	2 Pseudomonas entomophila L48 Gene: PSEEN4919: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) Gene: PSEEN2058: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Pseudomonas putida KT2440 Gene: PP4868: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4921: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	2 Pseudomonas fluorescens Pf-5 Gene: PFL_2467: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) Gene: PFL_0594: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Pseudomonas mendocina ymp Gene: Pmen_1411: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)
nadE	Pseudomonas aeruginosa PAO1 Gene: PA4920: NAD synthetase (EC 6.3.1.5)	Pseudomonas entomophila L48 Gene: PSEEN4920: NAD synthetase (EC 6.3.1.5)	Pseudomonas putida KT2440 Gene: PP4869: NAD synthetase (EC 6.3.1.5)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4922: NAD synthetase (EC 6.3.1.5)	2 Pseudomonas fluorescens Pf-5 Gene: PFL_2468: NAD synthetase (EC 6.3.1.5) Gene: PFL_0593: NAD synthetase (EC 6.3.1.5)	Pseudomonas mendocina ymp Gene: Pmen_1410: NAD synthetase (EC 6.3.1.5)	Pseudomonas stutzeri A1501 Gene: PST_1831: NAD synthetase (EC 6.3.1.5)	Azotobacter vinelandii AvOP	NAD synthetase (EC 6.3.1.5)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrtR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --