Regulog NrtR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - NrtR
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 5 | 2 |
| Pseudomonas entomophila L48 | 3 | 2 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Pseudomonas fluorescens Pf-5 | 6 | 2 |
| Pseudomonas mendocina ymp | 4 | 2 |
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nadD |
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Pseudomonas aeruginosa PAO1 Site: position = -69 score = 5.42041 sequence = ATAATTCATCACGTGAAATAA Gene: PA4917: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family |
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Pseudomonas fluorescens Pf-5 Site: position = -35 score = 5.41151 sequence = AAGGTACACGTCATGTACCAA Site: position = -156 score = 5.46795 sequence = AAAGTATATGTCATGTACTTT Gene: PFL_2465: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family |
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Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family |
| nrtR |
Gene: PA4916: Nudix-related transcriptional regulator NrtR |
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Pseudomonas entomophila L48 Site: position = -113 score = 5.3333 sequence = ATAATTCACCTGGTGCATTAA Gene: PSEEN2060: Nudix-related transcriptional regulator NrtR |
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Gene: PFL_2464: Nudix-related transcriptional regulator NrtR |
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Pseudomonas mendocina ymp Site: position = -109 score = 5.25428 sequence = ATATTTCATCTGATGAAATAT Gene: Pmen_1413: Nudix-related transcriptional regulator NrtR |
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Nudix-related transcriptional regulator NrtR |
| PFL_2463 |
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Gene: PFL_2463: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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ADP-ribose pyrophosphatase (EC 3.6.1.13) |
| CRON 2. | |||||||||
| pncA |
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Pseudomonas aeruginosa PAO1 Site: position = -61 score = 5.42041 sequence = TTATTTCACGTGATGAATTAT Gene: PA4918: Nicotinamidase (EC 3.5.1.19) |
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Pseudomonas entomophila L48 Site: position = -51 score = 5.3333 sequence = TTAATGCACCAGGTGAATTAT Gene: PSEEN2059: Nicotinamidase (EC 3.5.1.19) |
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*
Pseudomonas fluorescens Pf-5 Site: position = -48 score = 5.46795 sequence = AAAGTACATGACATATACTTT Site: position = -169 score = 5.41151 sequence = TTGGTACATGACGTGTACCTT Gene: PFL_2466: Nicotinamidase (EC 3.5.1.19) |
*
Pseudomonas mendocina ymp Site: position = -52 score = 5.25428 sequence = ATATTTCATCAGATGAAATAT Gene: Pmen_1412: Nicotinamidase (EC 3.5.1.19) |
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Nicotinamidase (EC 3.5.1.19) |
| pncB |
Gene: PA4919: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
2
Pseudomonas entomophila L48 Gene: PSEEN4919: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) Gene: PSEEN2058: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: PP4868: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: PSPTO4921: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
2
Pseudomonas fluorescens Pf-5 Gene: PFL_2467: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) Gene: PFL_0594: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: Pmen_1411: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
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Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
| nadE |
Gene: PA4920: NAD synthetase (EC 6.3.1.5) |
Gene: PSEEN4920: NAD synthetase (EC 6.3.1.5) |
Gene: PP4869: NAD synthetase (EC 6.3.1.5) |
Gene: PSPTO4922: NAD synthetase (EC 6.3.1.5) |
2
Pseudomonas fluorescens Pf-5 Gene: PFL_2468: NAD synthetase (EC 6.3.1.5) Gene: PFL_0593: NAD synthetase (EC 6.3.1.5) |
Gene: Pmen_1410: NAD synthetase (EC 6.3.1.5) |
Gene: PST_1831: NAD synthetase (EC 6.3.1.5) |
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NAD synthetase (EC 6.3.1.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |