Regulog BirA - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 6 | 2 |
| Marinobacter aqueolei | 5 | 2 |
| Marinobacter sp. ELB17 | 7 | 3 |
| Oceanobacter sp. RED65 | 5 | 1 |
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | 7 | 2 |
| Saccharophagus degradans 2-40 | 4 | 2 |
| Teredinibacter turnerae T7901 | 5 | 2 |
| Cellvibrio japonicus Ueda107 | 5 | 2 |
| Chromohalobacter salexigens DSM 3043 | 6 | 1 |
| Reinekea sp. MED297 | 6 | 2 |
| Alcanivorax borkumensis SK2 | 6 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| bioB |
*
Hahella chejuensis KCTC 2396 Site: position = -164 score = 8.07255 sequence = CTGTTAACC-(14)-GGTTGACAG Gene: HCH_05371: Biotin synthase (EC 2.8.1.6) |
*
Marinobacter aqueolei Site: position = -41 score = 7.54231 sequence = CCGTAAACC-(14)-GGTTAACAG Site: position = -104 score = 8.07255 sequence = CTGTTAACC-(14)-GGTTGACAG Gene: Maqu_2756: Biotin synthase (EC 2.8.1.6) |
*
Marinobacter sp. ELB17 Site: position = -40 score = 7.54231 sequence = CCGTAAACC-(14)-GGTTAACAG Site: position = -102 score = 8.07255 sequence = CTGTTAACC-(14)-GGTTGACAG Gene: MELB17_06979: Biotin synthase (EC 2.8.1.6) |
*
Oceanobacter sp. RED65 Site: position = -152 score = 8.31812 sequence = CTGTAAACC-(14)-GGTTGACTG Gene: RED65_04570: Biotin synthase (EC 2.8.1.6) |
Gene: MED92_16370: Biotin synthase (EC 2.8.1.6) |
*
Marinomonas sp. MWYL1 Site: position = -85 score = 8.37218 sequence = TTGTAAACC-(14)-TGTTGACAG Gene: Mmwyl1_3457: Biotin synthase (EC 2.8.1.6) |
*
Saccharophagus degradans 2-40 Site: position = -90 score = 8.99046 sequence = TTGTAAACC-(15)-GGTTGACAG Gene: Sde_3139: Biotin synthase (EC 2.8.1.6) |
*
Teredinibacter turnerae T7901 Site: position = -110 score = 8.70579 sequence = TTGTAAACT-(15)-GGTTGACAA Gene: TERTU_0490: Biotin synthase (EC 2.8.1.6) |
*
Cellvibrio japonicus Ueda107 Site: position = -63 score = 8.46171 sequence = TAGTAAACC-(15)-GGTTGACAG Gene: CJA_0426: Biotin synthase (EC 2.8.1.6) |
*
Chromohalobacter salexigens DSM 3043 Site: position = -46 score = 7.31199 sequence = TGGTCAACC-(14)-AGTTGACCA Site: position = -102 score = 8.84478 sequence = TTGTCAACC-(15)-GGTTGACAT Gene: Csal_1167: Biotin synthase (EC 2.8.1.6) |
*
Reinekea sp. MED297 Site: position = -83 score = 6.77442 sequence = ATGTAAAGT-(15)-AATTGACAA Gene: MED297_08751: Biotin synthase (EC 2.8.1.6) |
*
Alcanivorax borkumensis SK2 Site: position = -83 score = 7.88985 sequence = CAGTAAACT-(16)-GGTTGACAG Gene: ABO_2220: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: HCH_05370: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Maqu_2755: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MELB17_06984: 8-amino-7-oxononanoate synthase |
Gene: RED65_04565: 8-amino-7-oxononanoate synthase |
Gene: MED92_16365: 8-amino-7-oxononanoate synthase |
Gene: Mmwyl1_3456: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Sde_3138: 8-amino-7-oxononanoate synthase |
Gene: TERTU_0491: 8-amino-7-oxononanoate synthase |
Gene: CJA_0427: 8-amino-7-oxononanoate synthase |
Gene: Csal_1166: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MED297_08756: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: ABO_2219: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioH |
Gene: HCH_05369: Biotin synthesis protein BioH |
|
Gene: MELB17_06989: Biotin synthesis protein BioH |
Gene: RED65_04560: Biotin synthesis protein BioH |
Gene: MED92_16360: Biotin synthesis protein BioH |
Gene: Mmwyl1_3455: Biotin synthesis protein BioH |
Gene: Sde_3137: Biotin synthesis protein BioH / Biotin synthesis protein BioC |
Gene: TERTU_0492: Biotin synthesis protein BioH / Biotin synthesis protein BioC |
Gene: CJA_0428: Biotin synthesis protein BioH / Biotin synthesis protein BioC |
Gene: Csal_1165: Biotin synthesis protein BioH |
Gene: MED297_08761: Biotin synthesis protein BioH |
Gene: ABO_2218: Biotin synthesis protein BioH |
Biotin synthesis protein BioH |
| bioC |
Gene: HCH_05368: Biotin synthesis protein BioC |
Gene: Maqu_2754: Biotin synthesis protein BioC |
Gene: MELB17_06994: Biotin synthesis protein BioC |
Gene: RED65_04555: Biotin synthesis protein BioC |
Gene: MED92_16355: Biotin synthesis protein BioC |
Gene: Mmwyl1_3454: Biotin synthesis protein BioC |
|
|
|
Gene: Csal_1164: Biotin synthesis protein BioC |
Gene: MED297_08766: Biotin synthesis protein BioC |
Gene: ABO_2217: Biotin synthesis protein BioC |
Biotin synthesis protein BioC |
| bioD |
Gene: HCH_05366: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Maqu_2753: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MELB17_06999: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: RED65_04550: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MED92_16350: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mmwyl1_3453: Dethiobiotin synthetase (EC 6.3.3.3) |
|
Gene: TERTU_0493: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: CJA_0429: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Csal_1163: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MED297_08771: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: ABO_2216: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
Gene: HCH_01529: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Maqu_3049: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Marinobacter sp. ELB17 Site: position = -78 score = 6.98106 sequence = CTGTTAACT-(14)-GGTTAACAG Gene: MELB17_04752: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: RED65_10464: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: MED92_16420: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Mmwyl1_3459: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Sde_2227: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: TERTU_1207: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: CJA_2079: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Csal_1162: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: MED297_01550: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: ABO_0256: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| COG1040 |
*
Hahella chejuensis KCTC 2396 Site: position = 30 score = 8.07255 sequence = CTGTCAACC-(14)-GGTTAACAG Gene: HCH_05372: Competence protein F homolog, phosphoribosyltransferase domain |
*
Marinobacter aqueolei Site: position = 21 score = 8.07255 sequence = CTGTCAACC-(14)-GGTTAACAG Site: position = -42 score = 7.54231 sequence = CTGTTAACC-(14)-GGTTTACGG Gene: Maqu_2757: Competence protein F homolog, phosphoribosyltransferase domain |
*
Marinobacter sp. ELB17 Site: position = 21 score = 8.07255 sequence = CTGTCAACC-(14)-GGTTAACAG Site: position = -41 score = 7.54231 sequence = CTGTTAACC-(14)-GGTTTACGG Gene: MELB17_06974: Competence protein F homolog, phosphoribosyltransferase domain |
|
Gene: MED92_16375: Competence protein F homolog, phosphoribosyltransferase domain |
*
Marinomonas sp. MWYL1 Site: position = 15 score = 8.37218 sequence = CTGTCAACA-(14)-GGTTTACAA Gene: Mmwyl1_3458: Competence protein F homolog, phosphoribosyltransferase domain |
*
Saccharophagus degradans 2-40 Site: position = -33 score = 8.99046 sequence = CTGTCAACC-(15)-GGTTTACAA Gene: Sde_3140: Competence protein F homolog, phosphoribosyltransferase domain |
*
Teredinibacter turnerae T7901 Site: position = -49 score = 8.70579 sequence = TTGTCAACC-(15)-AGTTTACAA Gene: TERTU_0489: Competence protein F homolog, phosphoribosyltransferase domain |
*
Cellvibrio japonicus Ueda107 Site: position = -147 score = 8.46171 sequence = CTGTCAACC-(15)-GGTTTACTA Gene: CJA_0425: Competence protein F homolog, phosphoribosyltransferase domain |
Gene: Csal_2296: Competence protein F homolog, phosphoribosyltransferase domain |
*
Reinekea sp. MED297 Site: position = -231 score = 6.77442 sequence = TTGTCAATT-(15)-ACTTTACAT Gene: MED297_08746: Competence protein F homolog, phosphoribosyltransferase domain |
*
Alcanivorax borkumensis SK2 Site: position = 4 score = 7.88985 sequence = CTGTCAACC-(16)-AGTTTACTG Gene: ABO_2221: Competence protein F homolog, phosphoribosyltransferase domain |
Competence protein F homolog, phosphoribosyltransferase domain |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |