Regulog HexR1 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HexR
- By taxonomy - Pseudomonadaceae
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 5 | 4 |
| Pseudomonas entomophila L48 | 4 | 3 |
| Pseudomonas putida KT2440 | 4 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 | 3 | 2 |
| Pseudomonas fluorescens Pf-5 | 3 | 2 |
| Pseudomonas mendocina ymp | 4 | 3 |
| Pseudomonas stutzeri A1501 | 4 | 3 |
| Azotobacter vinelandii AvOP | 4 | 3 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| aceE |
*
Pseudomonas aeruginosa PAO1 Site: position = -129 score = 6.22084 sequence = CTGTAGTAAAACTACAA Site: position = -181 score = 5.66422 sequence = ATGTAGTTTTACTACTA Gene: PA5015: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas entomophila L48 Site: position = -125 score = 6.1653 sequence = TTGTAGTAAAACTACAC Site: position = -177 score = 5.5666 sequence = GTGTAGTTTTACTACTA Gene: PSEEN5145: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas putida KT2440 Site: position = -177 score = 5.66422 sequence = ATGTAGTTTTACTACTA Site: position = -125 score = 6.26292 sequence = ATGTAGTAAAACTACAA Gene: PP0339: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -127 score = 6.1653 sequence = TTGTAGTAAAACTACAC Site: position = -179 score = 5.42013 sequence = CTGTAGTTTTACTACTG Gene: PSPTO5005: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas fluorescens Pf-5 Site: position = -178 score = 5.36459 sequence = CTGTAGTTTTACTACTC Site: position = -126 score = 6.1653 sequence = TTGTAGTAAAACTACAC Gene: PFL_0509: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas mendocina ymp Site: position = -128 score = 6.26292 sequence = ATGTAGTAAAACTACAA Site: position = -181 score = 5.82416 sequence = TTGTAGTTTTACTACTA Gene: Pmen_0576: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Pseudomonas stutzeri A1501 Site: position = -179 score = 5.62215 sequence = CTGTAGTTTTACTACTA Site: position = -128 score = 6.22084 sequence = TTGTAGTAAAACTACAG Gene: PST_3852: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
*
Azotobacter vinelandii AvOP Site: position = -114 score = 6.42286 sequence = TTGTAGTAAAACTACAA Gene: Avin_44900: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
| aceF |
Gene: PA5016: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PSEEN5146: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PP0338: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PSPTO5006: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PFL_0508: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: Pmen_0575: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PST_3853: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: Avin_44910: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
| CRON 2. | |||||||||
| aldE |
*
Pseudomonas aeruginosa PAO1 Site: position = -67 score = 6.00536 sequence = ATGTAGTAAAACTACAC Gene: PA3185: Aldose 1-epimerase |
2
Pseudomonas entomophila L48 Gene: PSEEN4407: Aldose 1-epimerase Gene: PSEEN5476: Aldose 1-epimerase |
2
Pseudomonas putida KT2440 Gene: PP5332: Aldose 1-epimerase Gene: PP1020: Aldose 1-epimerase |
2
Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1298: Aldose 1-epimerase Gene: PSPTO5490: Aldose 1-epimerase |
2
Pseudomonas fluorescens Pf-5 Gene: PFL_6122: Aldose 1-epimerase Gene: PFL_4612: Aldose 1-epimerase |
2
Pseudomonas mendocina ymp Gene: Pmen_0088: Aldose 1-epimerase Gene: Pmen_1155: Aldose 1-epimerase |
Gene: PST_4107: Aldose 1-epimerase |
Gene: Avin_48620: Aldose 1-epimerase |
Aldose 1-epimerase |
| CRON 3. | |||||||||
| hexR1 |
*
Pseudomonas aeruginosa PAO1 Site: position = -45 score = 6.42286 sequence = TTGTAGTATAACTACAA Gene: PA5438: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas entomophila L48 Site: position = -60 score = 6.26292 sequence = ATGTAGTATAACTACAA Gene: PSEEN5499: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas putida KT2440 Site: position = -60 score = 6.26292 sequence = ATGTAGTATAACTACAA Gene: PP5350: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -61 score = 6.26292 sequence = ATGTAGTATAACTACAA Gene: PSPTO5515: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -63 score = 6.22084 sequence = CTGTAGTATAACTACAA Gene: PFL_6160: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas mendocina ymp Site: position = -105 score = 6.26292 sequence = ATGTAGTATAACTACAA Gene: Pmen_4485: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas stutzeri A1501 Site: position = -195 score = 5.62215 sequence = TTGTAGTATAACTACCG Gene: PST_0183: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Azotobacter vinelandii AvOP Site: position = -61 score = 6.06091 sequence = ATGTAGTATAACTACAG Gene: Avin_02030: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Central carbohydrate metabolism transcription regulator HexR, RpiR family |
| CRON 4. | |||||||||
| zwf |
*
Pseudomonas aeruginosa PAO1 Site: position = -57 score = 6.42286 sequence = TTGTAGTTATACTACAA Gene: PA5439: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas entomophila L48 Site: position = -45 score = 6.26292 sequence = TTGTAGTTATACTACAT Gene: PSEEN5500: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas putida KT2440 Site: position = -45 score = 6.26292 sequence = TTGTAGTTATACTACAT Gene: PP5351: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
|
|
*
Pseudomonas mendocina ymp Site: position = -131 score = 6.26292 sequence = TTGTAGTTATACTACAT Gene: Pmen_4486: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas stutzeri A1501 Site: position = -59 score = 5.62215 sequence = CGGTAGTTATACTACAA Gene: PST_0182: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Azotobacter vinelandii AvOP Site: position = -43 score = 6.06091 sequence = CTGTAGTTATACTACAT Gene: Avin_02020: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |