Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HexR1 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 5 4
Pseudomonas entomophila L48 4 3
Pseudomonas putida KT2440 4 3
Pseudomonas syringae pv. tomato str. DC3000 3 2
Pseudomonas fluorescens Pf-5 3 2
Pseudomonas mendocina ymp 4 3
Pseudomonas stutzeri A1501 4 3
Azotobacter vinelandii AvOP 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
aceE
*
Pseudomonas aeruginosa PAO1

Site:
position = -129
score = 6.22084
sequence = CTGTAGTAAAACTACAA

Site:
position = -181
score = 5.66422
sequence = ATGTAGTTTTACTACTA

Gene: PA5015: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas entomophila L48

Site:
position = -125
score = 6.1653
sequence = TTGTAGTAAAACTACAC

Site:
position = -177
score = 5.5666
sequence = GTGTAGTTTTACTACTA

Gene: PSEEN5145: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas putida KT2440

Site:
position = -177
score = 5.66422
sequence = ATGTAGTTTTACTACTA

Site:
position = -125
score = 6.26292
sequence = ATGTAGTAAAACTACAA

Gene: PP0339: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -127
score = 6.1653
sequence = TTGTAGTAAAACTACAC

Site:
position = -179
score = 5.42013
sequence = CTGTAGTTTTACTACTG

Gene: PSPTO5005: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -178
score = 5.36459
sequence = CTGTAGTTTTACTACTC

Site:
position = -126
score = 6.1653
sequence = TTGTAGTAAAACTACAC

Gene: PFL_0509: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas mendocina ymp

Site:
position = -128
score = 6.26292
sequence = ATGTAGTAAAACTACAA

Site:
position = -181
score = 5.82416
sequence = TTGTAGTTTTACTACTA

Gene: Pmen_0576: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Pseudomonas stutzeri A1501

Site:
position = -179
score = 5.62215
sequence = CTGTAGTTTTACTACTA

Site:
position = -128
score = 6.22084
sequence = TTGTAGTAAAACTACAG

Gene: PST_3852: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
*
Azotobacter vinelandii AvOP

Site:
position = -114
score = 6.42286
sequence = TTGTAGTAAAACTACAA

Gene: Avin_44900: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
aceF
 
Pseudomonas aeruginosa PAO1

Gene: PA5016: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas entomophila L48

Gene: PSEEN5146: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas putida KT2440

Gene: PP0338: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO5006: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0508: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas mendocina ymp

Gene: Pmen_0575: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudomonas stutzeri A1501

Gene: PST_3853: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Azotobacter vinelandii AvOP

Gene: Avin_44910: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
CRON 2.
aldE
*
Pseudomonas aeruginosa PAO1

Site:
position = -67
score = 6.00536
sequence = ATGTAGTAAAACTACAC

Gene: PA3185: Aldose 1-epimerase
 2
Pseudomonas entomophila L48

Gene: PSEEN4407: Aldose 1-epimerase

Gene: PSEEN5476: Aldose 1-epimerase
 2
Pseudomonas putida KT2440

Gene: PP5332: Aldose 1-epimerase

Gene: PP1020: Aldose 1-epimerase
 2
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO1298: Aldose 1-epimerase

Gene: PSPTO5490: Aldose 1-epimerase
 2
Pseudomonas fluorescens Pf-5

Gene: PFL_6122: Aldose 1-epimerase

Gene: PFL_4612: Aldose 1-epimerase
 2
Pseudomonas mendocina ymp

Gene: Pmen_0088: Aldose 1-epimerase

Gene: Pmen_1155: Aldose 1-epimerase
 
Pseudomonas stutzeri A1501

Gene: PST_4107: Aldose 1-epimerase
 
Azotobacter vinelandii AvOP

Gene: Avin_48620: Aldose 1-epimerase
Aldose 1-epimerase
 
CRON 3.
hexR1
*
Pseudomonas aeruginosa PAO1

Site:
position = -45
score = 6.42286
sequence = TTGTAGTATAACTACAA

Gene: PA5438: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas entomophila L48

Site:
position = -60
score = 6.26292
sequence = ATGTAGTATAACTACAA

Gene: PSEEN5499: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas putida KT2440

Site:
position = -60
score = 6.26292
sequence = ATGTAGTATAACTACAA

Gene: PP5350: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -61
score = 6.26292
sequence = ATGTAGTATAACTACAA

Gene: PSPTO5515: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -63
score = 6.22084
sequence = CTGTAGTATAACTACAA

Gene: PFL_6160: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas mendocina ymp

Site:
position = -105
score = 6.26292
sequence = ATGTAGTATAACTACAA

Gene: Pmen_4485: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Pseudomonas stutzeri A1501

Site:
position = -195
score = 5.62215
sequence = TTGTAGTATAACTACCG

Gene: PST_0183: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Azotobacter vinelandii AvOP

Site:
position = -61
score = 6.06091
sequence = ATGTAGTATAACTACAG

Gene: Avin_02030: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
CRON 4.
zwf
*
Pseudomonas aeruginosa PAO1

Site:
position = -57
score = 6.42286
sequence = TTGTAGTTATACTACAA

Gene: PA5439: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Pseudomonas entomophila L48

Site:
position = -45
score = 6.26292
sequence = TTGTAGTTATACTACAT

Gene: PSEEN5500: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Pseudomonas putida KT2440

Site:
position = -45
score = 6.26292
sequence = TTGTAGTTATACTACAT

Gene: PP5351: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -131
score = 6.26292
sequence = TTGTAGTTATACTACAT

Gene: Pmen_4486: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Pseudomonas stutzeri A1501

Site:
position = -59
score = 5.62215
sequence = CGGTAGTTATACTACAA

Gene: PST_0182: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Azotobacter vinelandii AvOP

Site:
position = -43
score = 6.06091
sequence = CTGTAGTTATACTACAT

Gene: Avin_02020: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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