Regulog DesT - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-CoA; Unsaturated acyl-ACP |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FabR
- By taxonomy - Pseudomonadaceae
- By TF family - TetR
- By effector - Unsaturated acyl-CoA
- By effector - Unsaturated acyl-ACP
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 3 | 2 |
| Pseudomonas entomophila L48 | 2 | 2 |
| Pseudomonas putida KT2440 | 2 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | 1 | 1 |
| Pseudomonas fluorescens Pf-5 | 2 | 2 |
| Pseudomonas mendocina ymp | 4 | 3 |
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| desC |
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Pseudomonas aeruginosa PAO1 Site: position = -73 score = 5.26232 sequence = AGTGAACGCTTGTTGACT Gene: PA4889: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Pseudomonas mendocina ymp Site: position = -71 score = 5.87549 sequence = AGTGAACAACTGTTGACT Site: position = -29 score = 5.297 sequence = TGTGCACAAGTGTTCACT Gene: Pmen_0668: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| desB |
Gene: PA4888: Acyl-CoA delta-9-desaturase, DesB |
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Gene: Pmen_0669: Acyl-CoA delta-9-desaturase, DesB |
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Acyl-CoA delta-9-desaturase, DesB |
| CRON 2. | |||||||||
| fabA |
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Pseudomonas aeruginosa PAO1 Site: position = -153 score = 5.55021 sequence = AGTGAACATCTGTTCGCC Gene: PA1610: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudomonas entomophila L48 Site: position = -150 score = 6.22242 sequence = AGTGCACACCTGTACTCT Gene: PSEEN3622: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudomonas putida KT2440 Site: position = -149 score = 5.96278 sequence = AGTGCACACCTGTACTTC Gene: PP4174: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -163 score = 5.71192 sequence = AGTGTACAGGTGTACTTT Gene: PSPTO2211: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudomonas fluorescens Pf-5 Site: position = -150 score = 5.91021 sequence = AGTGCACAAGTGTACATT Gene: PFL_1737: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudomonas mendocina ymp Site: position = -144 score = 5.53838 sequence = AGAGTACAACTGTACTCA Gene: Pmen_2469: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: PST_1893: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Avin_29050: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
| CRON 3. | |||||||||
| plsC |
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*
Pseudomonas entomophila L48 Site: position = -48 score = 5.55664 sequence = AGTGCACACCCGTACACT Gene: PSEEN1546: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Pseudomonas putida KT2440 Site: position = -48 score = 5.55664 sequence = AGTGCACACCCGTACACT Gene: PP1844: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Pseudomonas fluorescens Pf-5 Site: position = -51 score = 5.37664 sequence = AGTGCACATCCGTACACT Gene: PFL_1839: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Pseudomonas mendocina ymp Site: position = -47 score = 5.21785 sequence = AGTGAACGCCCGTACACT Gene: Pmen_2584: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |