Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog DesT - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-CoA; Unsaturated acyl-ACP
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 3 2
Pseudomonas entomophila L48 2 2
Pseudomonas putida KT2440 2 2
Pseudomonas syringae pv. tomato str. DC3000 1 1
Pseudomonas fluorescens Pf-5 2 2
Pseudomonas mendocina ymp 4 3
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
desC
*
Pseudomonas aeruginosa PAO1

Site:
position = -73
score = 5.26232
sequence = AGTGAACGCTTGTTGACT

Gene: PA4889: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -71
score = 5.87549
sequence = AGTGAACAACTGTTGACT

Site:
position = -29
score = 5.297
sequence = TGTGCACAAGTGTTCACT

Gene: Pmen_0668: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB
 
Pseudomonas aeruginosa PAO1

Gene: PA4888: Acyl-CoA delta-9-desaturase, DesB
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_0669: Acyl-CoA delta-9-desaturase, DesB
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Acyl-CoA delta-9-desaturase, DesB
 
CRON 2.
fabA
*
Pseudomonas aeruginosa PAO1

Site:
position = -153
score = 5.55021
sequence = AGTGAACATCTGTTCGCC

Gene: PA1610: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudomonas entomophila L48

Site:
position = -150
score = 6.22242
sequence = AGTGCACACCTGTACTCT

Gene: PSEEN3622: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudomonas putida KT2440

Site:
position = -149
score = 5.96278
sequence = AGTGCACACCTGTACTTC

Gene: PP4174: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -163
score = 5.71192
sequence = AGTGTACAGGTGTACTTT

Gene: PSPTO2211: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudomonas fluorescens Pf-5

Site:
position = -150
score = 5.91021
sequence = AGTGCACAAGTGTACATT

Gene: PFL_1737: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
*
Pseudomonas mendocina ymp

Site:
position = -144
score = 5.53838
sequence = AGAGTACAACTGTACTCA

Gene: Pmen_2469: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Pseudomonas stutzeri A1501

Gene: PST_1893: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
Azotobacter vinelandii AvOP

Gene: Avin_29050: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
 
CRON 3.
plsC
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -48
score = 5.55664
sequence = AGTGCACACCCGTACACT

Gene: PSEEN1546: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Pseudomonas putida KT2440

Site:
position = -48
score = 5.55664
sequence = AGTGCACACCCGTACACT

Gene: PP1844: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -51
score = 5.37664
sequence = AGTGCACATCCGTACACT

Gene: PFL_1839: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
*
Pseudomonas mendocina ymp

Site:
position = -47
score = 5.21785
sequence = AGTGAACGCCCGTACACT

Gene: Pmen_2584: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise