Regulog NagR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40	9	4
Teredinibacter turnerae T7901	8	3
Cellvibrio japonicus Ueda107	13	7
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
cbp	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	* Cellvibrio japonicus Ueda107 Site: position = -139 score = 5.61722 sequence = AAAGGCAACGTTGTCATT Gene: CJA_2191: chitin-binding protein A	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	chitin-binding protein A

CRON 2.
chiA	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	* Saccharophagus degradans 2-40 Site: position = -200 score = 5.55296 sequence = TTTGACAACGTTGTCTTT Gene: Sde_3605: Chitinase (EC 3.2.1.14)	* Teredinibacter turnerae T7901 Site: position = -184 score = 5.44667 sequence = TCTGACAACGTTGTCTTT Site: position = -213 score = 6.01365 sequence = ATTGACAACGTTGTCTTC Gene: TERTU_0285: Chitinase (EC 3.2.1.14)	Cellvibrio japonicus Ueda107 Gene: CJA_2611: Chitinase (EC 3.2.1.14)	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297 Gene: MED297_00800: Chitinase (EC 3.2.1.14)	Alcanivorax borkumensis SK2	Chitinase (EC 3.2.1.14)

CRON 3.
chiD	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	* Saccharophagus degradans 2-40 Site: position = -257 score = 5.31347 sequence = AGATACAACGTTGTCATT Site: position = -288 score = 5.3555 sequence = TTTGACAACGTTGTCTAT Gene: Sde_3982: Chitodextrinase (EC 3.2.1.14)	Teredinibacter turnerae T7901	* Cellvibrio japonicus Ueda107 Site: position = -350 score = 5.24922 sequence = TTTGACAACGTTGTCTCT Gene: CJA_0988: Chitodextrinase (EC 3.2.1.14)	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Chitodextrinase (EC 3.2.1.14)

CRON 4.
omp_nag	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	* Saccharophagus degradans 2-40 Site: position = -141 score = 5.23531 sequence = TTTGACAACGTTGTCAAA Site: position = -106 score = 5.55296 sequence = CATGACAACGTTGTCCAT Gene: Sde_3035: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Teredinibacter turnerae T7901 Site: position = -164 score = 6.01365 sequence = GTTGACAACGTTGTCTTT Site: position = -96 score = 5.86301 sequence = CATGACAACGTTGTCATA Gene: TERTU_0808: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
nagK	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3036: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Teredinibacter turnerae T7901 Gene: TERTU_0810: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Cellvibrio japonicus Ueda107 Site: position = -252 score = 4.97992 sequence = TTTGACAACGTTGTCTCG Gene: CJA_1160: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
hex	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3037: Beta-N-acetylhexosaminidase	Teredinibacter turnerae T7901 Gene: TERTU_0811: Beta-N-acetylhexosaminidase	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Beta-N-acetylhexosaminidase
nagP	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3038: N-acetylglucosamine transporter, NagP	Teredinibacter turnerae T7901 Gene: TERTU_0812: N-acetylglucosamine transporter, NagP	Cellvibrio japonicus Ueda107 Gene: CJA_1161: N-acetylglucosamine transporter, NagP	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine transporter, NagP
nagX	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3039: N-acetylglucosamine related transporter, NagX	Teredinibacter turnerae T7901 Gene: TERTU_0813: N-acetylglucosamine related transporter, NagX	Cellvibrio japonicus Ueda107 Gene: CJA_1162: N-acetylglucosamine related transporter, NagX	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine related transporter, NagX
nagA	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3040: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Teredinibacter turnerae T7901 Gene: TERTU_0814: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Cellvibrio japonicus Ueda107 Gene: CJA_1163: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107 Gene: CJA_1164: glucosamine-6-phosphate isomerase	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	glucosamine-6-phosphate isomerase
nagB2	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	* Saccharophagus degradans 2-40 Site: position = -134 score = 5.67947 sequence = AATGACAACGTTGTCTCG Gene: Sde_3041: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	* Teredinibacter turnerae T7901 Site: position = -59 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: TERTU_0815: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)

CRON 5.
hex	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	* Cellvibrio japonicus Ueda107 Site: position = -81 score = 5.24922 sequence = CTGGACAACGTTGTCAGT Gene: CJA_0287: Beta-hexosaminidase (EC 3.2.1.52)	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Beta-hexosaminidase (EC 3.2.1.52)

CRON 6.
omp_nag	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_1093: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Teredinibacter turnerae T7901 Gene: TERTU_4665: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	3 Cellvibrio japonicus Ueda107* Site: position = -223 score = 5.23621 sequence = ATTGACAGCGCTGTCACA Gene: CJA_1069: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -213 score = 6.04205 sequence = ATTGACAGCGCTGTCATT Gene: CJA_3072: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -121 score = 5.47711 sequence = GTTGACAACGTTGTCCGT Site: position = -85 score = 4.93826 sequence = ATCGACAACGTTGTCTTA Gene: CJA_1157: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
trpX	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	2 Cellvibrio japonicus Ueda107 Gene: CJA_1070: Tryptophan halogenase Gene: CJA_1159: Tryptophan halogenase	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Tryptophan halogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --