Regulog NagR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | ||
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | ||
| Saccharophagus degradans 2-40 | 9 | 4 |
| Teredinibacter turnerae T7901 | 8 | 3 |
| Cellvibrio japonicus Ueda107 | 13 | 7 |
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | ||
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| cbp |
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Cellvibrio japonicus Ueda107 Site: position = -139 score = 5.61722 sequence = AAAGGCAACGTTGTCATT Gene: CJA_2191: chitin-binding protein A |
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chitin-binding protein A |
| CRON 2. | |||||||||||||
| chiA |
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Saccharophagus degradans 2-40 Site: position = -200 score = 5.55296 sequence = TTTGACAACGTTGTCTTT Gene: Sde_3605: Chitinase (EC 3.2.1.14) |
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Teredinibacter turnerae T7901 Site: position = -184 score = 5.44667 sequence = TCTGACAACGTTGTCTTT Site: position = -213 score = 6.01365 sequence = ATTGACAACGTTGTCTTC Gene: TERTU_0285: Chitinase (EC 3.2.1.14) |
Gene: CJA_2611: Chitinase (EC 3.2.1.14) |
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Gene: MED297_00800: Chitinase (EC 3.2.1.14) |
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Chitinase (EC 3.2.1.14) |
| CRON 3. | |||||||||||||
| chiD |
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Saccharophagus degradans 2-40 Site: position = -257 score = 5.31347 sequence = AGATACAACGTTGTCATT Site: position = -288 score = 5.3555 sequence = TTTGACAACGTTGTCTAT Gene: Sde_3982: Chitodextrinase (EC 3.2.1.14) |
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Cellvibrio japonicus Ueda107 Site: position = -350 score = 5.24922 sequence = TTTGACAACGTTGTCTCT Gene: CJA_0988: Chitodextrinase (EC 3.2.1.14) |
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Chitodextrinase (EC 3.2.1.14) |
| CRON 4. | |||||||||||||
| omp_nag |
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Saccharophagus degradans 2-40 Site: position = -141 score = 5.23531 sequence = TTTGACAACGTTGTCAAA Site: position = -106 score = 5.55296 sequence = CATGACAACGTTGTCCAT Gene: Sde_3035: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
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Teredinibacter turnerae T7901 Site: position = -164 score = 6.01365 sequence = GTTGACAACGTTGTCTTT Site: position = -96 score = 5.86301 sequence = CATGACAACGTTGTCATA Gene: TERTU_0808: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| nagK |
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Gene: Sde_3036: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
Gene: TERTU_0810: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Cellvibrio japonicus Ueda107 Site: position = -252 score = 4.97992 sequence = TTTGACAACGTTGTCTCG Gene: CJA_1160: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
| hex |
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Gene: Sde_3037: Beta-N-acetylhexosaminidase |
Gene: TERTU_0811: Beta-N-acetylhexosaminidase |
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Beta-N-acetylhexosaminidase |
| nagP |
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Gene: Sde_3038: N-acetylglucosamine transporter, NagP |
Gene: TERTU_0812: N-acetylglucosamine transporter, NagP |
Gene: CJA_1161: N-acetylglucosamine transporter, NagP |
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N-acetylglucosamine transporter, NagP |
| nagX |
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Gene: Sde_3039: N-acetylglucosamine related transporter, NagX |
Gene: TERTU_0813: N-acetylglucosamine related transporter, NagX |
Gene: CJA_1162: N-acetylglucosamine related transporter, NagX |
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N-acetylglucosamine related transporter, NagX |
| nagA |
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Gene: Sde_3040: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: TERTU_0814: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: CJA_1163: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagB |
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Gene: CJA_1164: glucosamine-6-phosphate isomerase |
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glucosamine-6-phosphate isomerase |
| nagB2 |
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Saccharophagus degradans 2-40 Site: position = -134 score = 5.67947 sequence = AATGACAACGTTGTCTCG Gene: Sde_3041: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Teredinibacter turnerae T7901 Site: position = -59 score = 6.63441 sequence = AATGACAACGTTGTCATT Gene: TERTU_0815: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
| CRON 5. | |||||||||||||
| hex |
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Cellvibrio japonicus Ueda107 Site: position = -81 score = 5.24922 sequence = CTGGACAACGTTGTCAGT Gene: CJA_0287: Beta-hexosaminidase (EC 3.2.1.52) |
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Beta-hexosaminidase (EC 3.2.1.52) |
| CRON 6. | |||||||||||||
| omp_nag |
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Gene: Sde_1093: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
Gene: TERTU_4665: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*3
Cellvibrio japonicus Ueda107 Site: position = -223 score = 5.23621 sequence = ATTGACAGCGCTGTCACA Gene: CJA_1069: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -213 score = 6.04205 sequence = ATTGACAGCGCTGTCATT Gene: CJA_3072: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -121 score = 5.47711 sequence = GTTGACAACGTTGTCCGT Site: position = -85 score = 4.93826 sequence = ATCGACAACGTTGTCTTA Gene: CJA_1157: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
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N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| trpX |
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2
Cellvibrio japonicus Ueda107 Gene: CJA_1070: Tryptophan halogenase Gene: CJA_1159: Tryptophan halogenase |
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Tryptophan halogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |