Regulog NagR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 27 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c
Alteromonas macleodii 'Deep ecotype'
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H	15	11
Alteromonadales bacterium TW-7	8	3
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2	14	9
Idiomarina baltica OS145
Idiomarina loihiensis L2TR

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
nagB	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -116 score = 6.04205 sequence = ATTGACAGCGCTGTCATT Gene: CPS_1008: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0148: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	* Pseudoalteromonas tunicata D2 Site: position = -139 score = 5.93486 sequence = AATGACAGCGTTGTCATA Gene: PTD2_18205: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)

CRON 2.
pgi2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -135 score = 6.04205 sequence = ATTGACAGCGCTGTCATT Gene: CPS_1020: Glucose-6-phosphate isomerase (EC 5.3.1.9)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -162 score = 5.58971 sequence = GATGACAACGGTGTCAAA Site: position = -129 score = 6.19809 sequence = GTTGACAGCGTTGTCATT Gene: PTD2_17630: Glucose-6-phosphate isomerase (EC 5.3.1.9)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Glucose-6-phosphate isomerase (EC 5.3.1.9)

CRON 3.
nagR	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -138 score = 6.04205 sequence = AATGACAGCGCTGTCAAT Gene: CPS_1019: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Alteromonadales bacterium TW-7 Gene: ATW7_01295: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -204 score = 5.58971 sequence = TTTGACACCGTTGTCATC Site: position = -237 score = 6.19809 sequence = AATGACAACGCTGTCAAC Gene: PTD2_17625: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Transcriptional regulator of N-acetylglucosamine utilization, LacI family

CRON 4.
nagS2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	2 Colwellia psychrerythraea 34H* Site: position = -283 score = 5.75131 sequence = AATGATATCGTTGTCAAT Gene: CPS_2381: Putative sulfatase (EC 3.1.6.-) Site: position = 2 score = 5.74435 sequence = GTTGACAACGTTATCATG Gene: CPS_2358: Putative sulfatase (EC 3.1.6.-)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Putative sulfatase (EC 3.1.6.-)

CRON 5.
omp_nag	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	2 Colwellia psychrerythraea 34H* Site: position = -111 score = 5.55386 sequence = ATTGACAACGATATCAAT Gene: CPS_2359: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -109 score = 5.93486 sequence = TATGACAGCGTTGTCATT Gene: CPS_1021: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Alteromonadales bacterium TW-7 Site: position = -130 score = 6.16766 sequence = AATGACAACGCTGTCATG Gene: ATW7_01300: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Pseudoalteromonas haloplanktis TAC125	2 Pseudoalteromonas tunicata D2* Site: position = -73 score = 6.35414 sequence = GATGACAGCGTTGTCATC Gene: PTD2_17650: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor Site: position = -71 score = 5.66556 sequence = TATGACAGCGTTGTCATG Gene: PTD2_17670: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
ATW7_01305	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_01305: Pass1-related protein	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pass1-related protein
hex	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1025: Beta-hexosaminidase (EC 3.2.1.52)	Alteromonadales bacterium TW-7 Gene: ATW7_01310: Beta-hexosaminidase (EC 3.2.1.52)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Beta-hexosaminidase (EC 3.2.1.52)
trpX	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	2 Colwellia psychrerythraea 34H Gene: CPS_1023: Tryptophan halogenase Gene: CPS_1022: Tryptophan halogenase	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	4 Pseudoalteromonas tunicata D2* Gene: PTD2_17655: Tryptophan halogenase Gene: PTD2_17680: Tryptophan halogenase Gene: PTD2_17675: Tryptophan halogenase Site: position = -262 score = 6.0504 sequence = GGTGACAACGCTGTCATC Gene: PTD2_17660: Tryptophan halogenase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Tryptophan halogenase

CRON 6.
bglX	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -70 score = 5.75131 sequence = ATTGACAACGATATCATT Gene: CPS_2379: Beta-glucosidase (EC 3.2.1.21)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Beta-glucosidase (EC 3.2.1.21)

CRON 7.
pckA	Pseudoalteromonas atlantica T6c Gene: Patl_2282: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03951: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007187: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Colwellia psychrerythraea 34H Gene: CPS_4595: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	* Alteromonadales bacterium TW-7 Site: position = -202 score = 5.10152 sequence = GATGATACCGGTGTCATA Site: position = -171 score = 5.64503 sequence = AATGACACCGGTATCATT Gene: ATW7_17462: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0228: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	* Pseudoalteromonas tunicata D2 Site: position = -201 score = 5.37573 sequence = AATGATACCGGTGTCATG Site: position = -169 score = 5.33432 sequence = GATGACACCGGTATCATG Gene: PTD2_16786: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Idiomarina baltica OS145 Gene: OS145_02115: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Idiomarina loihiensis L2TR Gene: IL0273: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)

CRON 8.
CPS_2383	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -132 score = 5.55386 sequence = ATTGATATCGTTGTCAAT Gene: CPS_2383: Putative surface protein	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Putative surface protein

CRON 9.
nagK	Pseudoalteromonas atlantica T6c Gene: Patl_0124: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00859: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -70 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: CPS_1026: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Alteromonadales bacterium TW-7 Site: position = -103 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: ATW7_01315: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -117 score = 6.43696 sequence = AATGACAACGCTGTCATT Gene: PTD2_18190: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagB2	2 Pseudoalteromonas atlantica T6c Gene: Patl_4173: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) Gene: Patl_0131: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_01320: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA	Pseudoalteromonas atlantica T6c Gene: Patl_4174: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00860: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1027: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Alteromonadales bacterium TW-7 Gene: ATW7_01325: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0157: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Pseudoalteromonas tunicata D2 Gene: PTD2_18195: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagP	Pseudoalteromonas atlantica T6c Gene: Patl_4175: N-acetyl glucosamine transporter, NagP	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1028: N-acetyl glucosamine transporter, NagP	Alteromonadales bacterium TW-7 Gene: ATW7_01330: N-acetyl glucosamine transporter, NagP	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -158 score = 5.3555 sequence = TATGATAGCGCTGTCATT Gene: PTD2_07429: N-acetyl glucosamine transporter, NagP	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	N-acetyl glucosamine transporter, NagP
nagX	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -55 score = 5.4757 sequence = AAAGACAGCGCTGTCTTT Gene: CPS_0413: N-acetylglucosamine related transporter, NagX	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2 Gene: PTD2_18200: N-acetylglucosamine related transporter, NagX	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	N-acetylglucosamine related transporter, NagX

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --