Regulog NrdR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | 3 | 1 |
| Corynebacterium aurimucosum ATCC 700975 | 3 | 1 |
| Corynebacterium diphtheriae NCTC 13129 | 5 | 2 |
| Corynebacterium efficiens YS-314 | 5 | 2 |
| Corynebacterium glutamicum ATCC 13032 | 3 | 1 |
| Corynebacterium jeikeium K411 | 3 | 1 |
| Corynebacterium kroppenstedtii DSM 44385 | 3 | 1 |
| Corynebacterium urealyticum DSM 7109 | 6 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nrdH |
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Corynebacterium amycolatum SK46 Site: position = -283 score = 4.49 sequence = GTACAACATCTTGTGC Site: position = -230 score = 4.49 sequence = GTACTACATCTAGTAT Site: position = -198 score = 3.92 sequence = GCACCAAGTGTAGTGT Gene: CORAM0001_1208: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Corynebacterium aurimucosum ATCC 700975 Site: position = -180 score = 4.81 sequence = CTACTACATATAGTGC Site: position = -148 score = 3.8 sequence = GCACAAAGTATAGTGT Gene: cauri_2113: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -176 score = 4.71 sequence = CCTCAACATGTAGGGG Site: position = -122 score = 4.52 sequence = ATACTAGATATTGTGC Site: position = -90 score = 3.99 sequence = CCACAAAGTATAGTGT Gene: DIP1869: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Corynebacterium efficiens YS-314 Site: position = -262 score = 4.17 sequence = GCGCAACATGTGGGGG Site: position = -209 score = 4.81 sequence = CTACTATATGTAGTGC Site: position = -177 score = 3.99 sequence = CCACAAAGTATAGTGT Gene: CE2425: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Corynebacterium glutamicum ATCC 13032 Site: position = -206 score = 4.27 sequence = TCGCTACATGTGGTGG Site: position = -153 score = 4.81 sequence = CTACTATATGTAGTGC Site: position = -121 score = 3.99 sequence = CCACAAAGTATAGTGT Gene: cg2789: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Corynebacterium jeikeium K411 Site: position = -273 score = 3.7 sequence = TGGCTAGATGTAGTGG Site: position = -220 score = 4.65 sequence = CTACTAGATATTGTGC Site: position = -188 score = 4.33 sequence = CCCCAAAATGTTGTGT Gene: jk0476: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -202 score = 4.63 sequence = TTACTACATATAGTGG Gene: ckrop_1413: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Corynebacterium urealyticum DSM 7109 Site: position = -206 score = 4.67 sequence = GCTCAACATGTAGTGG Site: position = -152 score = 5.03 sequence = CCACAATATCTAGTGT Site: position = -120 score = 4.11 sequence = GCCCAAAATATTGTGG Gene: cur_1484: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| CE0124 |
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Gene: cur_1483: hypothetical protein |
putative membrane protein |
| nrdI |
Gene: CORAM0001_1207: Ribonucleotide reduction protein NrdI |
Gene: cauri_2112: Ribonucleotide reduction protein NrdI |
Gene: DIP1868: Ribonucleotide reduction protein NrdI |
Gene: CE2424: Ribonucleotide reduction protein NrdI |
Gene: cg2787: Ribonucleotide reduction protein NrdI |
Gene: jk0477: Ribonucleotide reduction protein NrdI |
Gene: ckrop_1412: Ribonucleotide reduction protein NrdI |
Gene: cur_1482: Ribonucleotide reduction protein NrdI |
Ribonucleotide reduction protein NrdI |
| nrdE |
Gene: CORAM0001_1206: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: cauri_2111: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: DIP1867: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: CE2423: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: cg2786: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: jk0478: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: ckrop_1411: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: cur_1481: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| CRON 2. | |||||||||
| nrdD |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -80 score = 4.04 sequence = CCACTACATATTGATT Site: position = -49 score = 4.31 sequence = CAACTATATCTTGTAG Gene: DIP0465: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Corynebacterium efficiens YS-314 Site: position = -126 score = 5.08 sequence = TCACTAGATGTAGTGG Gene: CE2363: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Corynebacterium urealyticum DSM 7109 Site: position = -156 score = 3.62 sequence = CCACAATATGTAGACA Site: position = -125 score = 3.45 sequence = CTTCCATATCTAGCGC Gene: cur_0305: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
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Gene: DIP0464: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CE2362: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: cur_0304: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |