Regulog PadR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	PadR
Regulation mode:	repressor
Biological process:	Phenolic acid stress response
Effector:	p-Coumaric acid; Ferulic acid
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - PadR
By effector - p-Coumaric acid
By effector - Ferulic acid
By pathway - Phenolic acid stress response

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	2	1
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13	1	1
Bacillus pumilus SAFR-032	2	2
Bacillus subtilis subsp. subtilis str. 168	3	1
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
yveF	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -48 score = 6.80956 sequence = GAACATGTAAATAGTTACATGATT Gene: BSU34420: Hypothetical protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
yveG	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -95 score = 7.12222 sequence = AAACGTGTAAATAGTTACATGTTT Gene: RBAM_031740: Hypothetical protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34410: Hypothetical protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
padC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031730: Phenolic acid decarboxylase (EC 4.1.1.-)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -58 score = 6.56965 sequence = ATATATGTAAATATCAACATGTTT Gene: BLi03407: Phenolic acid decarboxylase (EC 4.1.1.-)	* Bacillus pumilus SAFR-032 Site: position = -59 score = 6.91344 sequence = AAACATGTAAATCACGACATGTTT Gene: BPUM_0712: Phenolic acid decarboxylase (EC 4.1.1.-)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34400: Phenolic acid decarboxylase (EC 4.1.1.-)	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Phenolic acid decarboxylase (EC 4.1.1.-)

CRON 2.
padR	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_008450: Transcriptional regulator of phenolic acid stress response, PadR family	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03079: Transcriptional regulator of phenolic acid stress response, PadR family	* Bacillus pumilus SAFR-032 Site: position = -77 score = 6.91344 sequence = AAACATGTCGTGATTTACATGTTT Gene: BPUM_0713: Transcriptional regulator of phenolic acid stress response, PadR family	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU08340: Transcriptional regulator of phenolic acid stress response, PadR family	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of phenolic acid stress response, PadR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PadR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --