Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PadR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: PadR
Regulation mode: repressor
Biological process: Phenolic acid stress response
Effector: p-Coumaric acid; Ferulic acid
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 1 1
Bacillus pumilus SAFR-032 2 2
Bacillus subtilis subsp. subtilis str. 168 3 1
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yveF
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -48
score = 6.80956
sequence = GAACATGTAAATAGTTACATGATT

Gene: BSU34420: Hypothetical protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
yveG
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -95
score = 7.12222
sequence = AAACGTGTAAATAGTTACATGTTT

Gene: RBAM_031740: Hypothetical protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34410: Hypothetical protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
padC
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031730: Phenolic acid decarboxylase (EC 4.1.1.-)
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -58
score = 6.56965
sequence = ATATATGTAAATATCAACATGTTT

Gene: BLi03407: Phenolic acid decarboxylase (EC 4.1.1.-)
*
Bacillus pumilus SAFR-032

Site:
position = -59
score = 6.91344
sequence = AAACATGTAAATCACGACATGTTT

Gene: BPUM_0712: Phenolic acid decarboxylase (EC 4.1.1.-)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU34400: Phenolic acid decarboxylase (EC 4.1.1.-)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Phenolic acid decarboxylase (EC 4.1.1.-)
 
CRON 2.
padR
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_008450: Transcriptional regulator of phenolic acid stress response, PadR family
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03079: Transcriptional regulator of phenolic acid stress response, PadR family
*
Bacillus pumilus SAFR-032

Site:
position = -77
score = 6.91344
sequence = AAACATGTCGTGATTTACATGTTT

Gene: BPUM_0713: Transcriptional regulator of phenolic acid stress response, PadR family
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU08340: Transcriptional regulator of phenolic acid stress response, PadR family
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of phenolic acid stress response, PadR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD