Regulog GudR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Glucarate utilization; Galactarate utilization
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/Others
By pathway - Glucarate utilization
By pathway - Galactarate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	6	2
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13	6	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16	7	3
Oceanobacillus iheyensis HTE831	7	1
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
gudR	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -42 score = 5.47532 sequence = CTATTTTGTCTTACAATTGAA Gene: BSU02500: Transcriptional regulator for glucarate/galactarate utilization, GntR family	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00288: Transcriptional regulator for glucarate/galactarate utilization, GntR family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -63 score = 5.94845 sequence = CCTATTTGTATTACAATTAAA Gene: ABC0472: Transcriptional regulator for glucarate/galactarate utilization, GntR family	* Oceanobacillus iheyensis HTE831 Site: position = -90 score = 6.59235 sequence = TTTATTTGTCGGACAAATAAA Gene: OB2842: Transcriptional regulator for glucarate/galactarate utilization, GntR family	Paenibacillus sp. JDR-2	Transcriptional regulator for glucarate/galactarate utilization, GntR family
kdgD	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -117 score = 7.00115 sequence = TTTATTTGTCTTACAATTAAA Gene: BSU02460: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -119 score = 7.00115 sequence = TTTATTTGTCTTACAATTAAA Gene: BLi00284: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -51 score = 6.4965 sequence = TTAATTTGTCTTACAATAAAA Gene: ABC0471: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Oceanobacillus iheyensis HTE831 Gene: OB2841: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Paenibacillus sp. JDR-2	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
kgsD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU02470: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00285: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC0470: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Oceanobacillus iheyensis HTE831 Gene: OB2840: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	Paenibacillus sp. JDR-2	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
tctB_Gud	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC0469: Tripartite tricarboxylate transporter family small permease component, putative transporter for glucarate	Oceanobacillus iheyensis HTE831 Gene: OB2839: Tripartite tricarboxylate transporter family small permease component, putative transporter for glucarate	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family small permease component, putative transporter for glucarate
tctA_Gud	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC0468: Tripartite tricarboxylate transporter family large permease component, putative transporter for glucarate	Oceanobacillus iheyensis HTE831 Gene: OB2838: Tripartite tricarboxylate transporter family large permease component, putative transporter for glucarate	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family large permease component, putative transporter for glucarate
tctC_Gud	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC0467: Tripartite tricarboxylate transporter family receptor, putative transporter for glucarate	Oceanobacillus iheyensis HTE831 Gene: OB2837: Tripartite tricarboxylate transporter family receptor, putative transporter for glucarate	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family receptor, putative transporter for glucarate
gudD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU02490: Glucarate dehydratase (EC 4.2.1.40)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00287: Glucarate dehydratase (EC 4.2.1.40)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB2836: Glucarate dehydratase (EC 4.2.1.40)	Paenibacillus sp. JDR-2	Glucarate dehydratase (EC 4.2.1.40)
gudP	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU02480: Glucarate/galactarate transporter	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00286: Glucarate/galactarate transporter	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Glucarate/galactarate transporter
garD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU02510: D-galactarate dehydratase (EC 4.2.1.42)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00289: D-galactarate dehydratase (EC 4.2.1.42)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	D-galactarate dehydratase (EC 4.2.1.42)

CRON 2.
ABC0466	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -50 score = 5.94845 sequence = TCTATTTGTCTTACAATTAAT Gene: ABC0466: Putative mannonate dehydratase (EC 4.2.1.8)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative mannonate dehydratase (EC 4.2.1.8)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GudR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --