Regulog RbsR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By trascription factor - RbsR
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	6	1
Bacillus amyloliquefaciens FZB42	6	1
Bacillus pumilus SAFR-032	6	1
Bacillus licheniformis DSM 13	6	1
Anoxybacillus flavithermus WK1	6	1
Geobacillus kaustophilus HTA426	6	1
Bacillus cereus ATCC 14579	5	1
Bacillus halodurans C-125	6	1
Bacillus clausii KSM-K16	6	1
Oceanobacillus iheyensis HTE831	6	1
Paenibacillus sp. JDR-2	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rbsR	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -36 score = 6.34233 sequence = CTATGTAAACGGTTACATAA Gene: BSU35910: Transcriptional repressor of ribose utilization, LacI family	* Bacillus amyloliquefaciens FZB42 Site: position = -35 score = 6.34233 sequence = TTATGTAAACGGTTACATAG Gene: RBAM_033080: Transcriptional repressor of ribose utilization, LacI family	* Bacillus pumilus SAFR-032 Site: position = -40 score = 6.55767 sequence = TTGTGTAAACGGTTACACAT Gene: BPUM_3263: Transcriptional repressor of ribose utilization, LacI family	* Bacillus licheniformis DSM 13 Site: position = 17 score = 6.51405 sequence = TTATGTAAACGGTTACACAA Gene: BLi03840: Transcriptional repressor of ribose utilization, LacI family	* Anoxybacillus flavithermus WK1 Site: position = -36 score = 6.65469 sequence = ATATGTAACCGGTTACAGAA Gene: Aflv_2673: Transcriptional repressor of ribose utilization, LacI family	* Geobacillus kaustophilus HTA426 Site: position = -43 score = 6.76675 sequence = ATGTGTAACCGGTTACACAT Gene: GK3231: Transcriptional repressor of ribose utilization, LacI family	* Bacillus cereus ATCC 14579 Site: position = -37 score = 6.11595 sequence = TTCTGTAAACGGTTACATGA Gene: BC0659: Transcriptional repressor of ribose utilization, LacI family	* Bacillus halodurans C-125 Site: position = -35 score = 6.69831 sequence = ATCTGTAACCGGTTACACAT Gene: BH3727: Transcriptional repressor of ribose utilization, LacI family	* Bacillus clausii KSM-K16 Site: position = -35 score = 6.38627 sequence = ATCTGTAACCGGTTACATGT Gene: ABC3549: Transcriptional repressor of ribose utilization, LacI family	* Oceanobacillus iheyensis HTE831 Site: position = -42 score = 5.99785 sequence = ATCTGAAACCGGTTCCATAT Gene: OB2577: Transcriptional repressor of ribose utilization, LacI family	* Paenibacillus sp. JDR-2 Site: position = -37 score = 6.29727 sequence = ATGTGTAAACGGTTCCACAT Gene: Pjdr2_3988: Transcriptional repressor of ribose utilization, LacI family	Transcriptional repressor of ribose utilization, LacI family
rbsK	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU35920: Ribokinase (EC 2.7.1.15)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033090: Ribokinase (EC 2.7.1.15)	Bacillus pumilus SAFR-032 Gene: BPUM_3264: Ribokinase (EC 2.7.1.15)	Bacillus licheniformis DSM 13 Gene: BLi03841: Ribokinase (EC 2.7.1.15)	Anoxybacillus flavithermus WK1 Gene: Aflv_2672: Ribokinase (EC 2.7.1.15)	Geobacillus kaustophilus HTA426 Gene: GK3230: Ribokinase (EC 2.7.1.15)	Bacillus cereus ATCC 14579 Gene: BC0660: Ribokinase (EC 2.7.1.15)	Bacillus halodurans C-125 Gene: BH3728: Ribokinase (EC 2.7.1.15)	3 Bacillus clausii KSM-K16 Gene: ABC3643: Ribokinase (EC 2.7.1.15) Gene: ABC3548: Ribokinase (EC 2.7.1.15) Gene: ABC3603: Ribokinase (EC 2.7.1.15)	Oceanobacillus iheyensis HTE831 Gene: OB2576: Ribokinase (EC 2.7.1.15)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3987: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)
rbsD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU35930: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033100: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus pumilus SAFR-032 Gene: BPUM_3265: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus licheniformis DSM 13 Gene: BLi03842: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Anoxybacillus flavithermus WK1 Gene: Aflv_2671: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Geobacillus kaustophilus HTA426 Gene: GK3229: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus cereus ATCC 14579 Gene: BC0661: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus halodurans C-125 Gene: BH3729: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Bacillus clausii KSM-K16 Gene: ABC3547: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Oceanobacillus iheyensis HTE831 Gene: OB2575: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3986: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU35940: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033110: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus pumilus SAFR-032 Gene: BPUM_3266: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus licheniformis DSM 13 Gene: BLi03843: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Anoxybacillus flavithermus WK1 Gene: Aflv_2670: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Geobacillus kaustophilus HTA426 Gene: GK3228: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus cereus ATCC 14579 Gene: BC0662: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus halodurans C-125 Gene: BH3730: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Bacillus clausii KSM-K16 Gene: ABC3546: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Oceanobacillus iheyensis HTE831 Gene: OB2574: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3985: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU35950: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033120: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus pumilus SAFR-032 Gene: BPUM_3267: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus licheniformis DSM 13 Gene: BLi03844: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Anoxybacillus flavithermus WK1 Gene: Aflv_2669: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Geobacillus kaustophilus HTA426 Gene: GK3227: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus cereus ATCC 14579 Gene: BC0663: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus halodurans C-125 Gene: BH3731: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Bacillus clausii KSM-K16 Gene: ABC3545: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Oceanobacillus iheyensis HTE831 Gene: OB2573: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3984: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU35960: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033130: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacillus pumilus SAFR-032 Gene: BPUM_3268: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacillus licheniformis DSM 13 Gene: BLi03845: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Anoxybacillus flavithermus WK1 Gene: Aflv_2668: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Geobacillus kaustophilus HTA426 Gene: GK3226: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH3732: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Bacillus clausii KSM-K16 Gene: ABC3544: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Oceanobacillus iheyensis HTE831 Gene: OB2572: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3983: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --