Regulog RbsR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - RbsR
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	6	1
Salmonella typhimurium LT2	6	1
Citrobacter koseri ATCC BAA-895	6	1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	6	1
Enterobacter sp. 638	6	1
Erwinia amylovora ATCC 49946	6	1
Yersinia pestis KIM
Serratia proteamaculans 568	6	1
Erwinia carotovora subsp. atroseptica SCRI1043	6	1
Edwardsiella tarda EIB202	6	1
Proteus mirabilis HI4320	6	1
Photorhabdus luminescens subsp. laumondii TTO1	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
rbsD	* Escherichia coli str. K-12 substr. MG1655 Site: position = -31 score = 7.00269 sequence = TCAGCGAAACGTTTCGCTGA Gene: b3748: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Salmonella typhimurium LT2 Site: position = -32 score = 7.1264 sequence = CCAGCGAAACGTTTCGCTAG Site: position = -111 score = 6.21851 sequence = CTAGCGAAACGTTTCGACGG Gene: STM3881: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Citrobacter koseri ATCC BAA-895 Site: position = -155 score = 7.1264 sequence = CCAGCGAAACGTTTCGCTAG Gene: CKO_00088: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -116 score = 6.21851 sequence = CTCGCGAAACGTTTCGATGG Site: position = -38 score = 7.06324 sequence = TTAGCGAAACGTTTCGCTAG Gene: KPN_04153: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Enterobacter sp. 638 Site: position = -32 score = 7.1264 sequence = TCAGCGAAACGTTTCGCTAG Gene: Ent638_4116: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Erwinia amylovora ATCC 49946 Site: position = -108 score = 6.48647 sequence = CCAGCAAAACGTTTCGATGG Site: position = -30 score = 6.06562 sequence = CTGGCGAAACGTTTCGCTGT Gene: EAM_0015: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -117 score = 6.79209 sequence = CCAGCGAAACGTTTCGATAG Site: position = -37 score = 6.90313 sequence = CAAGCGAAACGTTTCGCTGG Gene: Spro_4901: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -32 score = 7.09193 sequence = TTAGCGAAACGTTTCGCTGG Site: position = -109 score = 6.75762 sequence = TTAGCGAAACGTTTCGATGG Gene: ECA0010: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Edwardsiella tarda EIB202 Site: position = -31 score = 7.04876 sequence = ATAGCGAAACGTTTCGCTGG Gene: ETAE_3516: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Proteus mirabilis HI4320 Site: position = -30 score = 6.95951 sequence = ACAGCGAAACGTTTCGCTGA Gene: PMI0093: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -32 score = 6.86767 sequence = ATAGCGAAACGTTTCGCTAA Site: position = -110 score = 6.18982 sequence = TTATCGAAACGTTTCGATAG Gene: plu0055: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsA	Escherichia coli str. K-12 substr. MG1655 Gene: b3749: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Salmonella typhimurium LT2 Gene: STM3882: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Citrobacter koseri ATCC BAA-895 Gene: CKO_00089: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04154: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Enterobacter sp. 638 Gene: Ent638_4115: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Erwinia amylovora ATCC 49946 Gene: EAM_0016: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_4900: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0011: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Edwardsiella tarda EIB202 Gene: ETAE_3515: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Proteus mirabilis HI4320 Gene: PMI0092: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0056: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Escherichia coli str. K-12 substr. MG1655 Gene: b3750: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Salmonella typhimurium LT2 Gene: STM3883: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Citrobacter koseri ATCC BAA-895 Gene: CKO_00090: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04155: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Enterobacter sp. 638 Gene: Ent638_4114: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Erwinia amylovora ATCC 49946 Gene: EAM_0017: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_4899: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0012: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Edwardsiella tarda EIB202 Gene: ETAE_3514: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Proteus mirabilis HI4320 Gene: PMI0091: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0057: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsB	Escherichia coli str. K-12 substr. MG1655 Gene: b3751: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Salmonella typhimurium LT2 Gene: STM3884: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Citrobacter koseri ATCC BAA-895 Gene: CKO_00091: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04156: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Enterobacter sp. 638 Gene: Ent638_4113: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Erwinia amylovora ATCC 49946 Gene: EAM_0018: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_4898: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0013: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Edwardsiella tarda EIB202 Gene: ETAE_3513: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Proteus mirabilis HI4320 Gene: PMI0090: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0058: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsK	Escherichia coli str. K-12 substr. MG1655 Gene: b3752: Ribokinase (EC 2.7.1.15)	Salmonella typhimurium LT2 Gene: STM3885: Ribokinase (EC 2.7.1.15)	Citrobacter koseri ATCC BAA-895 Gene: CKO_00092: Ribokinase (EC 2.7.1.15)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04157: Ribokinase (EC 2.7.1.15)	Enterobacter sp. 638 Gene: Ent638_4112: Ribokinase (EC 2.7.1.15)	Erwinia amylovora ATCC 49946 Gene: EAM_0019: Ribokinase (EC 2.7.1.15)	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_4897: Ribokinase (EC 2.7.1.15)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0014: Ribokinase (EC 2.7.1.15)	Edwardsiella tarda EIB202 Gene: ETAE_3512: Ribokinase (EC 2.7.1.15)	Proteus mirabilis HI4320 Gene: PMI0089: Ribokinase (EC 2.7.1.15)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0059: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)
rbsR	Escherichia coli str. K-12 substr. MG1655 Gene: b3753: Transcriptional repressor of ribose utilization, LacI family	Salmonella typhimurium LT2 Gene: STM3886: Transcriptional repressor of ribose utilization, LacI family	Citrobacter koseri ATCC BAA-895 Gene: CKO_00093: Transcriptional repressor of ribose utilization, LacI family	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04158: Transcriptional repressor of ribose utilization, LacI family	Enterobacter sp. 638 Gene: Ent638_4111: Transcriptional repressor of ribose utilization, LacI family	Erwinia amylovora ATCC 49946 Gene: EAM_0020: Transcriptional repressor of ribose utilization, LacI family	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_4896: Transcriptional repressor of ribose utilization, LacI family	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0015: Transcriptional repressor of ribose utilization, LacI family	Edwardsiella tarda EIB202 Gene: ETAE_3511: Transcriptional repressor of ribose utilization, LacI family	Proteus mirabilis HI4320 Gene: PMI0088: Transcriptional repressor of ribose utilization, LacI family	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0060: Transcriptional repressor of ribose utilization, LacI family	Transcriptional repressor of ribose utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --