Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rbsD gene

Properties
Regulog: RbsR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Proteobacteria/gamma
Built upon 17 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Citrobacter koseri ATCC BAA-895
Position: -155
Score: 7.1264
Sequence: CCAGCGAAACGTTTCGCTAG
Locus tag: CKO_00088
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: CKO_00089
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: CKO_00090
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: CKO_00091
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: CKO_00092
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: CKO_00093
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -155 7.1 CCAGCGAAACGTTTCGCTAG CKO_00088
Edwardsiella tarda EIB202
Position: -31
Score: 7.04876
Sequence: ATAGCGAAACGTTTCGCTGG
Locus tag: ETAE_3516
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: ETAE_3515
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: ETAE_3514
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: ETAE_3513
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: ETAE_3512
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: ETAE_3511
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -31 7 ATAGCGAAACGTTTCGCTGG ETAE_3516
Enterobacter sp. 638
Position: -32
Score: 7.1264
Sequence: TCAGCGAAACGTTTCGCTAG
Locus tag: Ent638_4116
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Ent638_4115
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Ent638_4114
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Ent638_4113
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Ent638_4112
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Ent638_4111
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -32 7.1 TCAGCGAAACGTTTCGCTAG Ent638_4116
Erwinia amylovora ATCC 49946
Position: -108
Score: 6.48647
Sequence: CCAGCAAAACGTTTCGATGG
Position: -30
Score: 6.06562
Sequence: CTGGCGAAACGTTTCGCTGT
Locus tag: EAM_0015
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: EAM_0016
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: EAM_0017
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: EAM_0018
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: EAM_0019
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: EAM_0020
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -108 6.5 CCAGCAAAACGTTTCGATGG EAM_0015
-30 6.1 CTGGCGAAACGTTTCGCTGT
Erwinia carotovora subsp. atroseptica SCRI1043
Position: -109
Score: 6.75762
Sequence: TTAGCGAAACGTTTCGATGG
Position: -32
Score: 7.09193
Sequence: TTAGCGAAACGTTTCGCTGG
Locus tag: ECA0010
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: ECA0011
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: ECA0012
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: ECA0013
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: ECA0014
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: ECA0015
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -109 6.8 TTAGCGAAACGTTTCGATGG ECA0010
-32 7.1 TTAGCGAAACGTTTCGCTGG
Escherichia coli str. K-12 substr. MG1655
Position: -31
Score: 7.00269
Sequence: TCAGCGAAACGTTTCGCTGA
Locus tag: b3748
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: b3749
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: b3750
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: b3751
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: b3752
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: b3753
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -31 7 TCAGCGAAACGTTTCGCTGA b3748
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Position: -116
Score: 6.21851
Sequence: CTCGCGAAACGTTTCGATGG
Position: -38
Score: 7.06324
Sequence: TTAGCGAAACGTTTCGCTAG
Locus tag: KPN_04153
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: KPN_04154
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: KPN_04155
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: KPN_04156
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: KPN_04157
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: KPN_04158
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -116 6.2 CTCGCGAAACGTTTCGATGG KPN_04153
-38 7.1 TTAGCGAAACGTTTCGCTAG
Photorhabdus luminescens subsp. laumondii TTO1
Position: -110
Score: 6.18982
Sequence: TTATCGAAACGTTTCGATAG
Position: -32
Score: 6.86767
Sequence: ATAGCGAAACGTTTCGCTAA
Locus tag: plu0055
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: plu0056
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: plu0057
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: plu0058
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: plu0059
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: plu0060
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -110 6.2 TTATCGAAACGTTTCGATAG plu0055
-32 6.9 ATAGCGAAACGTTTCGCTAA
Proteus mirabilis HI4320
Position: -30
Score: 6.95951
Sequence: ACAGCGAAACGTTTCGCTGA
Locus tag: PMI0093
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PMI0092
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PMI0091
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PMI0090
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PMI0089
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PMI0088
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -30 7 ACAGCGAAACGTTTCGCTGA PMI0093
Salmonella typhimurium LT2
Position: -111
Score: 6.21851
Sequence: CTAGCGAAACGTTTCGACGG
Position: -32
Score: 7.1264
Sequence: CCAGCGAAACGTTTCGCTAG
Locus tag: STM3881
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: STM3882
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: STM3883
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: STM3884
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: STM3885
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: STM3886
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -111 6.2 CTAGCGAAACGTTTCGACGG STM3881
-32 7.1 CCAGCGAAACGTTTCGCTAG
Serratia proteamaculans 568
Position: -117
Score: 6.79209
Sequence: CCAGCGAAACGTTTCGATAG
Position: -37
Score: 6.90313
Sequence: CAAGCGAAACGTTTCGCTGG
Locus tag: Spro_4901
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Spro_4900
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Spro_4899
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Spro_4898
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Spro_4897
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Spro_4896
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
rbsD-rbsA-rbsC-rbsB-rbsK-rbsR -117 6.8 CCAGCGAAACGTTTCGATAG Spro_4901
-37 6.9 CAAGCGAAACGTTTCGCTGG
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