Propagation of FabR regulog to Shewanella baltica OS185
| Source regulog: | FabR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella baltica OS185 |
| Orthologous TF(s) | Shew185_0175 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -34
Score: 4.8 Sequence: GCGGTACACTTGTAAGCT
Locus tag: Shew185_0075
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| Shew185_0075 | -34 | 4.8 | GCGGTACACTTGTAAGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lcfE | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO_0075 | -121 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0061 | -35 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp W3-18-1 | Sputw3181_4017 | -35 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp ANA-3 | Shewana3_0080 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_0078 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_0076 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella baltica OS155 | Sbal_4274 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella denitrificans OS217 | Sden_0072 | -32 | 4.6 | CAGGTACAAGTGTAAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3973 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella amazonensis SB2B | Sama_3571 | -59 | 4.6 | GAGGAACACTTGTAAGCT |
| Shewanella loihica PV-4 | Shew_3776 | -35 | 4.7 | CAGGTACAAGTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_4186 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_0063 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella piezotolerans WP3 | swp_0114 | -121 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4459 | -34 | 4.8 | GAGGAACACCTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4860 | -34 | 5 | GAGGTACACCTGTACGCT |
|
Position: -43
Score: 6.2 Sequence: AGCTTACAGATGTACGCT
Locus tag: Shew185_0174
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| Shew185_0174 | -43 | 6.2 | AGCTTACAGATGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: OLE1 | ||||
| Ortholog function: Fatty acid desaturase (EC 1.14.19.1) | ||||
| Shewanella oneidensis MR-1 | SO_0197 | -42 | 6.3 | AGCTTACAGCTGTACGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3542 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_3679 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella sp ANA-3 | Shewana3_0177 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella sp MR-4 | Shewmr4_0176 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella sp MR-7 | Shewmr7_0171 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella baltica OS155 | Sbal_4181 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella denitrificans OS217 | Sden_0229 | -41 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0123 | -53 | 6.2 | AGCGTACAATTGTACGCT |
| Shewanella amazonensis SB2B | Sama_0191 | -29 | 6.3 | AGCTTACAGCTGTACGCT |
| Shewanella loihica PV-4 | Shew_0136 | -43 | 6 | GGCTTACAGCTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_0162 | -9 | 6 | GGCGTACAGATGTACGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_4156 | -40 | 6.3 | AGCGTACAGATGTACGCT |
| Shewanella piezotolerans WP3 | swp_0204 | -40 | 6.4 | AGCGTACAGCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4340 | -41 | 6.3 | AGCGTACAGATGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4712 | -41 | 6.3 | AGCGTACAGATGTACGCT |
|
Position: -119
Score: 6.2 Sequence: AGCGTACATCTGTAAGCT
Locus tag: Shew185_0175
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| Shew185_0175 | -119 | 6.2 | AGCGTACATCTGTAAGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fabR | ||||
| Ortholog function: Unsaturated fatty acid biosythesis repressor FabR, TetR family | ||||
| Shewanella oneidensis MR-1 | SO_0198 | -119 | 6.3 | AGCGTACAGCTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3541 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella sp W3-18-1 | Sputw3181_3678 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella sp ANA-3 | Shewana3_0178 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_0177 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_0172 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella baltica OS155 | Sbal_4180 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella denitrificans OS217 | Sden_0230 | -121 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0124 | -121 | 6.2 | AGCGTACAATTGTACGCT |
| Shewanella amazonensis SB2B | Sama_0192 | -119 | 6.3 | AGCGTACAGCTGTAAGCT |
| Shewanella loihica PV-4 | Shew_0137 | -114 | 6 | AGCGTACAGCTGTAAGCC |
| Shewanella halifaxensis HAW-EB4 | Shal_4155 | -55 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella piezotolerans WP3 | swp_0205 | -118 | 6.4 | AGCGTACAGCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4339 | -129 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4711 | -128 | 6.3 | AGCGTACATCTGTACGCT |
|
Position: -85
Score: 6.3 Sequence: AGCTTACAAGTGTACGCT
Locus tag: Shew185_2325
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| Shew185_2325 | -85 | 6.3 | AGCTTACAAGTGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hylII | ||||
| Ortholog function: COG1272: Predicted membrane protein hemolysin III homolog | ||||
| Shewanella oneidensis MR-1 | SO_2447 | -114 | 6.5 | AGCGTACACGTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_1920 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_2088 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella sp ANA-3 | Shewana3_1934 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_1879 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_2099 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella baltica OS155 | Sbal_2325 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella denitrificans OS217 | Sden_1768 | -84 | 5.9 | AGCTTACACGCGTACGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1873 | -94 | 5.4 | AGCTTACACGTGTTCACC |
| Shewanella amazonensis SB2B | Sama_1862 | -89 | 5.8 | AGCGTACACATGTACTCT |
| Shewanella loihica PV-4 | Shew_2098 | -90 | 6.1 | GGCGTACACATGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_2385 | -36 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_1898 | -87 | 6.1 | AGCGTACACGTGTGCGCT |
| Shewanella piezotolerans WP3 | swp_2328 | -130 | 6.3 | AGCTAACACGTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_2012 | -88 | 6.6 | AGCGTACACGTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_2594 | -88 | 6.5 | AGCTTACACGTGTACGCT |
|
Position: -54
Score: 6.3 Sequence: AGCTTACACGTGTTCGCT
Locus tag: Shew185_2605
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| Shew185_2605 | -54 | 6.3 | AGCTTACACGTGTTCGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fabA | ||||
| Ortholog function: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) | ||||
| Shewanella oneidensis MR-1 | SO_1856 | -53 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_1637 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp W3-18-1 | Sputw3181_2388 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp ANA-3 | Shewana3_1606 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp MR-4 | Shewmr4_1545 | -53 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp MR-7 | Shewmr7_1612 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella baltica OS155 | Sbal_2565 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella denitrificans OS217 | Sden_2465 | -60 | 6.3 | AGCGTACACCTGTTCGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2656 | -60 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella amazonensis SB2B | Sama_1605 | -58 | 6 | GGCGTACAGGTGTTCGCT |
| Shewanella loihica PV-4 | Shew_1817 | -55 | 6 | GGCGTACACGTGTTAGCT |
| Shewanella pealeana ATCC 700345 | Spea_1951 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_2348 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella piezotolerans WP3 | swp_2802 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella sediminis HAW-EB3 | Ssed_2468 | -57 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella woodyi ATCC 51908 | Swoo_2148 | -56 | 6.3 | AGCTTACACGTGTTCGCT |
|
Position: -327
Score: 5.3 Sequence: AGCGCACACTTGTGCGCT
Locus tag: Shew185_2791
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| Shew185_2791 | -327 | 5.3 | AGCGCACACTTGTGCGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Shewanella oneidensis MR-1 | SO_3099 | -311 | 6.2 | GGCGTACAGGTGTACGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_2470 | -303 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_1538 | -303 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella sp ANA-3 | Shewana3_1450 | -311 | 6.4 | AGCGTACAAGTGTACGCT |
| Shewanella sp MR-4 | Shewmr4_1397 | -311 | 6.4 | AGCGTACATGTGTACGCT |
| Shewanella sp MR-7 | Shewmr7_1462 | -311 | 6.4 | AGCGTACATGTGTACGCT |
| Shewanella baltica OS155 | Sbal_2771 | -327 | 5.3 | AGCGCACACTTGTGCGCT |
| Shewanella amazonensis SB2B | Sama_2178 | -297 | 6.4 | AGCGTACACATGTACGCT |
| Shewanella loihica PV-4 | Shew_2436 | -333 | 6.4 | AGCGTACAAGTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_2609 | -319 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_2681 | -241 | 6.2 | AGCGTACATTTGTACGCT |
| Shewanella piezotolerans WP3 | swp_3153 | -316 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_1618 | -327 | 6.6 | AGCGTACACGTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_3037 | -318 | 5.3 | AGCTTACAACTGTACACC |
|
Position: -80
Score: 4.9 Sequence: AGCTTACAGATGTAAACA
Locus tag: Shew185_3796
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| Shew185_3796 | -80 | 4.9 | AGCTTACAGATGTAAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: plsC | ||||
| Ortholog function: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) | ||||
| Shewanella oneidensis MR-1 | SO_0567 | -80 | 4.9 | AGCTTACAGATGTAAACA |
| Shewanella putrefaciens CN-32 | Sputcn32_3308 | -38 | 4.6 | GGCTTACAGATGTAAACA |
| Shewanella sp W3-18-1 | Sputw3181_0633 | -38 | 4.6 | GGCTTACAGATGTAAACA |
| Shewanella sp ANA-3 | Shewana3_0568 | -41 | 4.9 | AGCTTACAGATGTAAACA |
| Shewanella sp MR-4 | Shewmr4_0569 | -41 | 4.9 | AGCTTACAGATGTAAACA |
| Shewanella sp MR-7 | Shewmr7_3461 | -41 | 4.9 | AGCTTACAGATGTAAACA |
| Shewanella baltica OS155 | Sbal_0529 | -80 | 4.9 | AGCTTACAGATGTAAACA |
| Shewanella denitrificans OS217 | Sden_0530 | -80 | 4.9 | AGCGTACATATGTAAACA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3514 | -80 | 4.9 | AGCGTACATATGTAAACA |
| Shewanella amazonensis SB2B | Sama_3139 | -80 | 4.8 | AGCGCACACGTGTAAACA |
| Shewanella pealeana ATCC 700345 | Spea_3713 | -104 | 4.8 | AGGCTACACGTGTAAACT |
| Shewanella halifaxensis HAW-EB4 | Shal_3798 | -104 | 4.8 | AGGCTACACGTGTAAACT |
| Shewanella piezotolerans WP3 | swp_0559 | -116 | 4.6 | AGGCTACATGTGTAAACT |