Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella baltica OS185

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella baltica OS185
Orthologous TF(s) Shew185_3713
Regulated genes 18
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella baltica OS185
Locus tag Position Score Sequence
Position: -134
Score: 4.8
Sequence: TACCTGTTTAGGGGTA
Locus tag: Shew185_0277
Shew185_0277 -134 4.8 TACCTGTTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -167 4.8 TACCTGTTTAGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0389 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp W3-18-1 Sputw3181_0243 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp ANA-3 Shewana3_0274 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp MR-4 Shewmr4_0273 -134 4.6 TACCTGTTTGGGGGTA
Shewanella sp MR-7 Shewmr7_3748 -134 4.6 TACCTGTTTGGGGGTA
Shewanella baltica OS155 Sbal_0284 -134 4.8 TACCTGTTTAGGGGTA
Shewanella amazonensis SB2B Sama_3524 -127 4.2 TACACGTTTAGAGGTA
Position: -176
Score: 4.8
Sequence: TACCTCTTTCGGGATA
Locus tag: Shew185_0531
Shew185_0531 -176 4.8 TACCTCTTTCGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Polysulfide reductase, subunit A
Shewanella oneidensis MR-1 SO4062 -179 5 TACCCCTTTAGGAATA
Shewanella sp ANA-3 Shewana3_3619 -181 5.1 TACCCCTTTAGGGATA
Shewanella amazonensis SB2B Sama_3177 -331 4.8 TACCTCTTTAGGGGTG
Shewanella piezotolerans WP3 swp_1238 -236 3.9 TACCACAATAGACATA
Position: -256
Score: 4.9
Sequence: TACCACTTAAGTAGTA
Locus tag: Shew185_0789
Shew185_0789 -256 4.9 TACCACTTAAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
Position: -118
Score: 5.1
Sequence: TACCTCTTGAGAGGTA
Locus tag: Shew185_0825
Shew185_0825 -118 5.1 TACCTCTTGAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -72
Score: 4.8
Sequence: TACCTCCAAATTGGTA
Locus tag: Shew185_1312
Shew185_1312 -72 4.8 TACCTCCAAATTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB
Ortholog function: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Shewanella oneidensis MR-1 SO1490 -68 5.1 TACCCCTTAATTGGTA
Shewanella sp ANA-3 Shewana3_2938 -68 5.1 TACCCCTTAATTGGTA
Shewanella sp MR-4 Shewmr4_2762 -68 5.1 TACCCCTTAATTGGTA
Shewanella sp MR-7 Shewmr7_2840 -68 5.1 TACCCCTTAATTGGTA
Shewanella baltica OS155 Sbal_1321 -72 4.8 TACCTCCAAATTGGTA
Position: -78
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Shew185_1473
Shew185_1473 -78 4.9 TACCACTTTATAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: Decaheme cytochrome c MtrF
Shewanella oneidensis MR-1 SO1659 -80 4.9 TACCACTTTATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1380 -77 4.9 TACCACTTTATAAGTA
Shewanella sp W3-18-1 Sputw3181_2721 -77 4.9 TACCACTTTATAAGTA
Shewanella sp ANA-3 Shewana3_2787 -77 4.9 TACCACTTTATAAGTA
Shewanella sp MR-4 Shewmr4_2613 -78 4.9 TACCACTTTATAAGTA
Shewanella sp MR-7 Shewmr7_2680 -78 4.9 TACCACTTTATAAGTA
Shewanella baltica OS155 Sbal_1478 -78 4.7 TACCACTTTGTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Shewanella amazonensis SB2B Sama_2228 -77 4.5 TACCACTTTATATATA
Shewanella loihica PV-4 Shew_0918 -21 4.8 TACCTATAAAGGGATA
Shewanella piezotolerans WP3 swp_0896 -18 4.8 TACCTATAAAGGGATA
Position: -132
Score: 4.3
Sequence: TACCTAGAAATGAGTA
Locus tag: Shew185_1485
Shew185_1485 -132 4.3 TACCTAGAAATGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -204
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shew185_1578
Shew185_1578 -204 5.2 TACCTCTTTAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -180
Score: 4.8
Sequence: TACTCCTAAAGAAATA
Locus tag: Shew185_1579
Shew185_1579 -180 4.8 TACTCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella sp ANA-3 Shewana3_2675 -179 5.1 TACCTCTAAAGAAATA
Shewanella sp MR-4 Shewmr4_2509 -179 5.1 TACCCCTAAAGAAATA
Shewanella sp MR-7 Shewmr7_2577 -179 5.1 TACCCCTAAAGAAATA
Shewanella baltica OS155 Sbal_1590 -180 4.8 TACTCCTAAAGAAATA
Position: -82
Score: 4.2
Sequence: TACTCATATCGAGATA
Locus tag: Shew185_1665
Shew185_1665 -82 4.2 TACTCATATCGAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS
Ortholog function: Heme-copper-containing inner membrane protein
Shewanella oneidensis MR-1 SO2805 -78 4.2 TACTCATAAGGGGATA
Shewanella sp ANA-3 Shewana3_2587 -77 4 TACTCAAAAGGAGATA
Shewanella sp MR-4 Shewmr4_2425 -77 4.4 TACTCATAAGGAGATA
Shewanella sp MR-7 Shewmr7_2495 -77 4.4 TACTCATAAGGAGATA
Shewanella baltica OS155 Sbal_1680 -82 4.2 TACTCATATCGAGATA
Position: -338
Score: 4.6
Sequence: TACTCCTTTATGAATA
Position: -144
Score: 4.6
Sequence: TACCAATTTGGAGGTA
Locus tag: Shew185_1934
Shew185_1934 -338 4.6 TACTCCTTTATGAATA
-144 4.6 TACCAATTTGGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella putrefaciens CN-32 Sputcn32_1901 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp W3-18-1 Sputw3181_2107 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-4 Shewmr4_1840 -137 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-7 Shewmr7_2137 -137 4.4 TACCGATTTGGAGGTA
Shewanella baltica OS155 Sbal_1908 -144 4.6 TACCAATTTGGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Shewanella amazonensis SB2B Sama_1620 -106 4.5 TACCGATTTAGGGGTA
Shewanella loihica PV-4 Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Position: -218
Score: 4.4
Sequence: TACCTCCAAAGTATTA
Locus tag: Shew185_2862
Shew185_2862 -218 4.4 TACCTCCAAAGTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3141
Ortholog function: Nonaheme cytochrome c lipoprotein
Shewanella oneidensis MR-1 SO3140.1 -205 4.3 TACTTCCAAAGATATA
Shewanella oneidensis MR-1 SO3140.2 -205 4.3 TACTTCCAAAGATATA
Shewanella putrefaciens CN-32 Sputcn32_2507 -219 4.9 TACCTCTAAAGTAATA
Shewanella sp W3-18-1 Sputw3181_1501 -219 4.4 TATCTCTAAAGTAATA
Shewanella sp ANA-3 Shewana3_1409 -216 4.6 TACCTCCAAAGATATA
Shewanella sp MR-4 Shewmr4_1356 -215 4.6 TACCTCCAAAGATATA
Shewanella baltica OS155 Sbal_2843 -217 4.4 TACCTCCAAAGTATTA
Shewanella loihica PV-4 Shew_2580 -248 5 TACCTCCAAAGAGATA
Shewanella woodyi ATCC 51908 Swoo_4517 -161 5.1 TACCTCTTTAGTAGTA
Position: -42
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Shew185_3505
Shew185_3505 -42 4.7 TAACCCTTATTAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fccA
Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewanella oneidensis MR-1 SO0970 -43 4.5 TATCCCTTATTAAGTA
Shewanella putrefaciens CN-32 Sputcn32_0905 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp W3-18-1 Sputw3181_3267 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp ANA-3 Shewana3_3318 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-4 Shewmr4_0808 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-7 Shewmr7_3215 -43 4.7 TAACCCTTATTAAGTA
Shewanella baltica OS155 Sbal_0859 -42 4.7 TAACCCTTATTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Shewanella amazonensis SB2B Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Shewanella loihica PV-4 Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Shewanella pealeana ATCC 700345 Spea_0722 -101 4.5 TACCTCAAAGTGAGTA
Shewanella halifaxensis HAW-EB4 Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Position: -95
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: Shew185_3711
Shew185_3711 -95 5.2 TACCCCCTAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -146
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: Shew185_3712
Shew185_3712 -146 5.1 TACCTCTTAGGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -217
Score: 3.7
Sequence: TAACTCGACAGAGTTA
Locus tag: Shew185_3747
Shew185_3747 -217 3.7 TAACTCGACAGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein, transcriptional regulator Crp
Shewanella oneidensis MR-1 SO0624 -217 4.2 TAACTCTACAGAGTTA
Shewanella putrefaciens CN-32 Sputcn32_0652 -217 3.7 TAACTCGACAGAGTTA
Shewanella sp W3-18-1 Sputw3181_3522 -217 3.7 TAACTCGACAGAGTTA
Shewanella sp ANA-3 Shewana3_0617 -217 4.2 TAACTCTACAGAGTTA
Shewanella sp MR-4 Shewmr4_0618 -217 4.2 TAACTCTACAGAGTTA
Shewanella sp MR-7 Shewmr7_3412 -217 4.2 TAACTCTACAGAGTTA
Shewanella baltica OS155 Sbal_0578 -217 3.7 TAACTCGACAGAGTTA
Position: -136
Score: 5
Sequence: TACTCCTTAAGAGATA
Locus tag: Shew185_3967
Shew185_3967 -136 5 TACTCCTTAAGAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Shewanella putrefaciens CN-32 Sputcn32_3576 -137 4.6 TACTCCCTAAGGAATA
Shewanella sp W3-18-1 Sputw3181_3715 -137 4.6 TACTCCCTAAGGAATA
Shewanella sp ANA-3 Shewana3_0397 -127 4.4 TACTCACTTAGAGATA
Shewanella sp MR-4 Shewmr4_0398 -127 4.7 TACTCCCTTAGAGATA
Shewanella sp MR-7 Shewmr7_3627 -127 4.7 TACTCCCTTAGAGATA
Shewanella baltica OS155 Sbal_3989 -136 5 TACTCCTTAAGAGATA
Shewanella amazonensis SB2B Sama_3236 -123 4 TACTCCTTTTGGCATA
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