Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_2938
Regulated genes 34
Built upon 505 sites [see more]
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -206
Score: 5.6
Sequence: AAATGATAATTATTACGATTT
Locus tag: swp_0084
swp_0084 -206 5.6 AAATGATAATTATTACGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_0585
Ortholog function: Putative siderophore biosynthesis protein, HpcH/HpaI aldolase family
Shewanella denitrificans OS217 Sden_0585 -69 5.3 AAATGATAATGAAAATCATTA
-63 5 TAATGAAAATCATTACCAGTC
Shewanella piezotolerans WP3 swp_0084 -206 5.6 AAATGATAATTATTACGATTT
-46 5 AAATGAGAACAATTGGCATCC
Position: -111
Score: 5.6
Sequence: AAATCGTAATAATTATCATTT
Locus tag: swp_0085
swp_0085 -111 5.6 AAATCGTAATAATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pvsA
Ortholog function: Vibrioferrin ligase/carboxylase protein PvsA
Shewanella piezotolerans WP3 swp_0085 -271 5 GGATGCCAATTGTTCTCATTT
-111 5.6 AAATCGTAATAATTATCATTT
Position: -104
Score: 5.3
Sequence: AAATGTGAATGATTCGCAATT
Locus tag: swp_0161
swp_0161 -104 5.3 AAATGTGAATGATTCGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: viuA
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO4516 -100 5.8 AAATGATATTGGTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_0330 -101 5.6 AAATGATAATCCTTCTCAGTT
Shewanella sp W3-18-1 Sputw3181_3878 -101 5.6 AAATGATAATCCTTCTCAGTT
Shewanella sp ANA-3 Shewana3_3923 -99 5.8 AAATGATATTGGTTATCATCT
Shewanella sp MR-4 Shewmr4_3727 -99 6 AAATGATATTGGTTATCATTT
Shewanella sp MR-7 Shewmr7_3798 -99 6 AAATGATATTGGTTATCATTT
Shewanella denitrificans OS217 Sden_0621 -92 5.2 AAATGAGAGTGATTTGCAATT
Shewanella piezotolerans WP3 swp_0161 -104 5.3 AAATGTGAATGATTCGCAATT
Position: -110
Score: 6
Sequence: AAATGAAAACCATTATTATTT
Locus tag: swp_0167
swp_0167 -110 6 AAATGAAAACCATTATTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftn
Ortholog function: Ferritin, Ftn
Shewanella oneidensis MR-1 SO0139 -133 5.7 AAATGAAAATCATTTTTATCA
Shewanella putrefaciens CN-32 Sputcn32_0132 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp W3-18-1 Sputw3181_3940 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp ANA-3 Shewana3_0132 -132 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp MR-4 Shewmr4_0133 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella sp MR-7 Shewmr7_0127 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella baltica OS155 Sbal_4222 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella amazonensis SB2B Sama_0141 -113 5.1 TAATGATAAGTGTTACTATTT
Shewanella loihica PV-4 Shew_0042 -381 5.4 TAACGATAATTATTTGCATTT
Shewanella pealeana ATCC 700345 Spea_0129 -111 6 AAATGAAAACCATTATTATTT
Shewanella halifaxensis HAW-EB4 Shal_4189 -111 6 AAATGAAAACCATTATTATTT
Shewanella piezotolerans WP3 swp_0167 -110 6 AAATGAAAACCATTATTATTT
Shewanella sediminis HAW-EB3 Ssed_4374 -107 5.7 TAATGATAATTATTAGTATTT
Shewanella woodyi ATCC 51908 Swoo_4766 -176 5.7 TAATGAGAATTATTTGTATTT
Position: -94
Score: 5.6
Sequence: TGTTGAGATTAATTATCATTT
Locus tag: swp_0926
swp_0926 -94 5.6 TGTTGAGATTAATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2875
Ortholog function: TonB-dependent siderophore receptor
Shewanella amazonensis SB2B Sama_2875 -68 5.7 AATTGAGAATTATTCTCAACA
Shewanella piezotolerans WP3 swp_0926 -94 5.6 TGTTGAGATTAATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0946 -81 5.9 AATTGATAATCGTTATCAATT
Position: -76
Score: 5.7
Sequence: AAGTGATAATCATTATCATTC
Locus tag: swp_0953
swp_0953 -76 5.7 AAGTGATAATCATTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1580
Ortholog function: TonB-dependent heme receptor
Shewanella oneidensis MR-1 SO1580 -82 5.5 ATGTGAGAATTATTCTCATCT
Shewanella putrefaciens CN-32 Sputcn32_1308 -84 5.6 AATTGAGAACTATTCTTATCT
Shewanella sp W3-18-1 Sputw3181_2795 -84 5.6 AATTGAGAACTATTCTTATCT
Shewanella sp ANA-3 Shewana3_2862 -81 5.6 AGGTGAGAATTATTCTCATCT
Shewanella baltica OS155 Sbal_1397 -84 5.4 AAGTGAGAACTATTCTTATCT
Shewanella denitrificans OS217 Sden_2503 -172 5.5 AACTGATAATCATTCTCATTG
Shewanella piezotolerans WP3 swp_0953 -76 5.7 AAGTGATAATCATTATCATTC
Position: -108
Score: 5.2
Sequence: CAACAATAATCATTATCATTT
Locus tag: swp_1134
swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -118
Score: 5.5
Sequence: TAATGATAATAATTATCTTTA
Position: -115
Score: 4.3
Sequence: TGATAATAATTATCTTTACTA
Locus tag: swp_1175
swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
-115 4.3 TGATAATAATTATCTTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -111
Score: 4.6
Sequence: ATATTAGAGGGATTATCATTT
Locus tag: swp_2093
swp_2093 -111 4.6 ATATTAGAGGGATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhC
Ortholog function: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
Shewanella pealeana ATCC 700345 Spea_3021 -80 5.5 AAATGAAATCAATTATAATTT
Shewanella halifaxensis HAW-EB4 Shal_3111 -78 4.8 AAATGGAATTAGTTATAATCT
Shewanella piezotolerans WP3 swp_2093 -111 4.6 ATATTAGAGGGATTATCATTT
Position: -9
Score: 5.5
Sequence: CAATGATAATTGTTCGCATTT
Locus tag: swp_2595
swp_2595 -9 5.5 CAATGATAATTGTTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2426
Ortholog function: Two component transcriptional regulator, Winged helix family
Shewanella oneidensis MR-1 SO2426 -2 5.6 AAATGATATTGATTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_1941 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp W3-18-1 Sputw3181_2064 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp ANA-3 Shewana3_1959 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-4 Shewmr4_1904 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-7 Shewmr7_2074 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella baltica OS155 Sbal_2050 -32 5.1 AAATGATATAGATTCTCGTTT
Shewanella denitrificans OS217 Sden_1906 10 5.6 TAATGAAAATGGTTATCGTTT
Shewanella frigidimarina NCIMB 400 Sfri_2150 -32 5.6 TAATGGTAATCGTTATCATTA
Shewanella amazonensis SB2B Sama_1718 -32 4.8 GAATAACAACCGTTCGCATTT
Shewanella loihica PV-4 Shew_1936 -31 6 TAATGATAACTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_2236 -34 5.3 TAATGCGAATTATTCGTATTT
Shewanella halifaxensis HAW-EB4 Shal_2220 -34 5.6 AAATGAAAATGATTCGCATTG
Shewanella piezotolerans WP3 swp_2595 -9 5.5 CAATGATAATTGTTCGCATTT
Shewanella sediminis HAW-EB3 Ssed_2316 -34 5.5 AAATGATAACAGTTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_2294 -36 5.4 TGTTGATAATTGTTCGCATTT
Position: 29
Score: 5.6
Sequence: TAATGTTAATAATTATCATTA
Locus tag: swp_2763
swp_2763 29 5.6 TAATGTTAATAATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2039
Ortholog function: Signalling protein with EAL domain
Shewanella oneidensis MR-1 SO2039 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella putrefaciens CN-32 Sputcn32_2106 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp W3-18-1 Sputw3181_1906 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp ANA-3 Shewana3_2237 -44 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-4 Shewmr4_2112 -42 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-7 Shewmr7_1862 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella baltica OS155 Sbal_2274 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella baltica OS155 Sbal_4560 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella denitrificans OS217 Sden_1592 -44 5.2 AAATAGGAATAATTAGCATTA
Shewanella amazonensis SB2B Sama_1896 -42 5.5 TAATGAGATTTATTTGCATTA
Shewanella halifaxensis HAW-EB4 Shal_1861 -35 5.2 TAATATAAACAATTATCATTT
Shewanella piezotolerans WP3 swp_2763 29 5.6 TAATGTTAATAATTATCATTA
Shewanella sediminis HAW-EB3 Ssed_1968 -56 5 TAATGTGAATAATTACTATTT
Position: -102
Score: 4.3
Sequence: TGATCATAATTGTTTTAAATC
Locus tag: swp_3069
swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -56
Score: 6.1
Sequence: AATTGATAACGATTTTCATTT
Locus tag: swp_3175
swp_3175 -56 6.1 AATTGATAACGATTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2841
Ortholog function: Hypothetical protein
Shewanella oneidensis MR-1 SO2841 -60 5.4 GACTGATAATAGTTTTCATTT
Shewanella putrefaciens CN-32 Sputcn32_1534 -59 5.6 GACTGATAATAATTTTCATTT
Shewanella sp W3-18-1 Sputw3181_2565 -59 5.6 GACTGATAATAATTTTCATTT
Shewanella sp ANA-3 Shewana3_2609 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella sp MR-4 Shewmr4_2447 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella sp MR-7 Shewmr7_2517 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella baltica OS155 Sbal_1657 -63 5.4 GACTGATAATAGTTTTCATTT
Shewanella amazonensis SB2B Sama_1270 -60 5.4 GACTGAGAATGGTTTTCATTT
Shewanella pealeana ATCC 700345 Spea_2627 -104 5.5 GAACGATAATGATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_2698 -103 5.8 TAACGATAATGATTTTCATTT
Shewanella piezotolerans WP3 swp_3175 -56 6.1 AATTGATAACGATTTTCATTT
Position: -225
Score: 5.3
Sequence: AAATAATAACCATTACTATTT
Position: -125
Score: 5.7
Sequence: AATTGAAAATTATTATCGTTT
Locus tag: swp_3271
swp_3271 -225 5.3 AAATAATAACCATTACTATTT
-125 5.7 AATTGAAAATTATTATCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella putrefaciens CN-32 Sputcn32_1480 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp W3-18-1 Sputw3181_2621 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp ANA-3 Shewana3_2671 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-4 Shewmr4_2505 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-7 Shewmr7_2573 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella baltica OS155 Sbal_1594 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella denitrificans OS217 Sden_2415 -116 5.4 AATTGAAAACTATTATCGTTA
Shewanella frigidimarina NCIMB 400 Sfri_2617 -111 5.1 AACTGAAAACTATTCTCGTTA
Shewanella amazonensis SB2B Sama_1214 -119 5.6 AATTGAAAATTATTATCGTTA
Shewanella loihica PV-4 Shew_2518 -192 5.8 CAATGAAAATGGTTCTCATTT
-123 5.7 AATTGAAAATTATTATCGTTT
Shewanella pealeana ATCC 700345 Spea_2691 -191 5.1 AAATAGTAACCATTCTTAATT
-126 5.7 AATTGAAAATTATTATCGTTT
Shewanella halifaxensis HAW-EB4 Shal_2777 -126 5.7 AATTGAAAATTATTATCGTTT
Shewanella piezotolerans WP3 swp_3271 -225 5.3 AAATAATAACCATTACTATTT
-125 5.7 AATTGAAAATTATTATCGTTT
Shewanella sediminis HAW-EB3 Ssed_1531 -219 4.9 GAGCGATAATCATTCTCATCT
-126 5.6 AATTGAAAACTATTCTCGTTT
Shewanella woodyi ATCC 51908 Swoo_3123 -218 4.8 TAGTGATAATCGTTCTCACAA
-125 5.6 AATTGAAAACTATTATCGTTT
Position: -339
Score: 5.7
Sequence: AAACGATAATAATTTTCAATT
Locus tag: swp_3272
swp_3272 -339 5.7 AAACGATAATAATTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: Periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -370 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp ANA-3 Shewana3_2672 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-4 Shewmr4_2506 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-7 Shewmr7_2574 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella baltica OS155 Sbal_1593 -335 5.4 TAACGATAATAGTTTTCAATT
Shewanella amazonensis SB2B Sama_1213 -297 5.6 TAACGATAATAATTTTCAATT
-150 4.7 AAATCAGACTAATTATTAATA
Shewanella loihica PV-4 Shew_2519 -291 5.7 AAACGATAATAATTTTCAATT
-222 5.8 AAATGAGAACCATTTTCATTG
Shewanella pealeana ATCC 700345 Spea_2692 -317 5.7 AAACGATAATAATTTTCAATT
-252 5.1 AATTAAGAATGGTTACTATTT
Shewanella halifaxensis HAW-EB4 Shal_2778 -336 5.7 AAACGATAATAATTTTCAATT
Shewanella piezotolerans WP3 swp_3272 -339 5.7 AAACGATAATAATTTTCAATT
-239 5.3 AAATAGTAATGGTTATTATTT
Shewanella sediminis HAW-EB3 Ssed_1530 -322 5.6 AAACGAGAATAGTTTTCAATT
-229 4.9 AGATGAGAATGATTATCGCTC
-110 4.8 AGATAAAAATGTTACTCATTT
Position: -67
Score: 5
Sequence: AAATGAGATTTGTTCTCAAAC
Locus tag: swp_3277
swp_3277 -67 5 AAATGAGATTTGTTCTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrH
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrH
Shewanella halifaxensis HAW-EB4 Shal_2783 -65 5.3 AGGTGAGAATAATTCTCATAA
Shewanella piezotolerans WP3 swp_3277 -67 5 AAATGAGATTTGTTCTCAAAC
Position: -155
Score: 5.2
Sequence: TATTGATAGCAATTCTCATTA
Locus tag: swp_3303
swp_3303 -155 5.2 TATTGATAGCAATTCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_3303
Ortholog function: TonB-dependent siderophore receptor
Shewanella piezotolerans WP3 swp_3303 -155 5.2 TATTGATAGCAATTCTCATTA
Position: -91
Score: 5.2
Sequence: GAATAAAAATGGTTATCAATA
Locus tag: swp_3413
swp_3413 -91 5.2 GAATAAAAATGGTTATCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3406
Ortholog function: Conserved hypothetical protein
Shewanella pealeana ATCC 700345 Spea_1223 -82 5.3 GAATGAAAACAGTTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_1257 -96 5.1 GAATGGAAACGGTTCTCAATT
Shewanella piezotolerans WP3 swp_3413 -91 5.2 GAATAAAAATGGTTATCAATA
Position: -51
Score: 5.8
Sequence: TAATGATAATGGTTATCATCA
Locus tag: swp_3568
swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
Position: -43
Score: 6.1
Sequence: TAATGATAATGATTATCAATT
Locus tag: swp_3598
swp_3598 -43 6.1 TAATGATAATGATTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3344
Ortholog function: Hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO3344 -44 6 AAATGATAATGATTATCAGTT
Shewanella putrefaciens CN-32 Sputcn32_2679 -40 6 AGATGATAATGATTATCAATT
Shewanella sp W3-18-1 Sputw3181_1332 -40 6 AGATGATAATGATTATCAATT
Shewanella sp ANA-3 Shewana3_1202 -44 6.1 AAATGATAATGATTATCACTT
Shewanella sp MR-4 Shewmr4_1201 -44 6.1 AAATGATAATGATTATCACTT
Shewanella sp MR-7 Shewmr7_1272 -44 6.1 AAATGATAATGATTATCACTT
Shewanella baltica OS155 Sbal_3017 -41 6 AGATGATAATGATTATCAATT
Shewanella loihica PV-4 Shew_1146 -43 6.3 AAATGATAATGATTATCAATT
Shewanella pealeana ATCC 700345 Spea_1134 -33 6.1 TAATGATAATGATTATCAATT
Shewanella halifaxensis HAW-EB4 Shal_1179 -44 6.1 AATTGATAATGATTATCAATT
Shewanella piezotolerans WP3 swp_3598 -43 6.1 TAATGATAATGATTATCAATT
Shewanella sediminis HAW-EB3 Ssed_1239 -41 5.7 TAATGATAATGATTATCAATC
Shewanella woodyi ATCC 51908 Swoo_1339 -42 6 AAATGATAATGATTATCAGTT
Position: -143
Score: 6.5
Sequence: AAATGATAATGATTTTCATTT
Locus tag: swp_3978
swp_3978 -143 6.5 AAATGATAATGATTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmuA
Ortholog function: TonB-dependent haem/haemoglobin receptor, HmuA
Shewanella oneidensis MR-1 SO3669 -169 5.7 AAATGATAATGATTTCTATTT
Shewanella putrefaciens CN-32 Sputcn32_0966 -178 6.1 AAATGATAATGATTACCATTT
Shewanella sp W3-18-1 Sputw3181_3201 -178 6.1 AAATGATAATGATTACCATTT
Shewanella sp ANA-3 Shewana3_3235 -171 6 AAATGATAATGATTTCCATTT
Shewanella baltica OS155 Sbal_0952 -284 6.1 AAATGATAATGATTTGCATTT
Shewanella denitrificans OS217 Sden_0790 -133 6.5 AAATGATAATGATTTTCATTT
Shewanella pealeana ATCC 700345 Spea_3327 -143 6.5 AAATGATAATGATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3399 -144 6.5 AAATGATAATGATTTTCATTT
Shewanella piezotolerans WP3 swp_3978 -143 6.5 AAATGATAATGATTTTCATTT
Shewanella woodyi ATCC 51908 Swoo_4004 -113 6.5 AAATGATAATGATTTTCATTT
Position: -183
Score: 6.5
Sequence: AAATGAAAATCATTATCATTT
Locus tag: swp_3979
swp_3979 -183 6.5 AAATGAAAATCATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tonB
Ortholog function: TonB mediated energy transduction system, energy transducer component, TonB
Shewanella oneidensis MR-1 SO3670 -97 5.7 AAATAGAAATCATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_0965 -75 6.1 AAATGGTAATCATTATCATTT
Shewanella sp W3-18-1 Sputw3181_3202 -75 6.1 AAATGGTAATCATTATCATTT
Shewanella sp ANA-3 Shewana3_3236 -98 6 AAATGGAAATCATTATCATTT
Shewanella baltica OS155 Sbal_0951 -63 6.1 AAATGCAAATCATTATCATTT
Shewanella denitrificans OS217 Sden_0789 -66 6.5 AAATGAAAATCATTATCATTT
Shewanella pealeana ATCC 700345 Spea_3328 -206 6.5 AAATGAAAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_3400 -207 6.5 AAATGAAAATCATTATCATTT
Shewanella piezotolerans WP3 swp_3979 -183 6.5 AAATGAAAATCATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4005 -80 6.5 AAATGAAAATCATTATCATTT
Position: -48
Score: 5.9
Sequence: AGTTGATAATGATTATCATTA
Locus tag: swp_3985
swp_3985 -48 5.9 AGTTGATAATGATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3339
Ortholog function: Coproporphyrinogen III oxidase
Shewanella pealeana ATCC 700345 Spea_3339 -53 5.8 ATTTGATAATAATTATCATTA
Shewanella halifaxensis HAW-EB4 Shal_3411 -54 5.9 ATTTGATAATGATTATCATTT
Shewanella piezotolerans WP3 swp_3985 -48 5.9 AGTTGATAATGATTATCATTA
Position: -86
Score: 5.8
Sequence: TAATGCAAATCGTTCTCATTT
Locus tag: swp_4049
swp_4049 -86 5.8 TAATGCAAATCGTTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0810
Ortholog function: Hypothetical protein
Shewanella denitrificans OS217 Sden_0721 -74 5.8 TAATGCAAATTGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0810 -78 5.6 TAATGCGAATCGTTATCAATT
Shewanella loihica PV-4 Shew_0675 -77 6 TAATGCAAATTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_0670 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3528 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella piezotolerans WP3 swp_4049 -86 5.8 TAATGCAAATCGTTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3793 -76 5.1 TAATGCAAACGATTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_0790 -79 5.8 TAATGAAAACGATTCGCATTT
Position: -60
Score: 5.2
Sequence: AATTGAGAACTATTATCAGCA
Locus tag: swp_4107
swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -44
Score: 5.7
Sequence: AAATACAAATCGTTATCATTT
Locus tag: swp_4138
swp_4138 -44 5.7 AAATACAAATCGTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0202
Ortholog function: Conserved hypothetical protein
Shewanella piezotolerans WP3 swp_4138 -124 5.3 AAATGATAATGATTGCTATTA
-44 5.7 AAATACAAATCGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_1505 -25 5.4 AAATGATAATTATTTGTATAT
Position: -81
Score: 6
Sequence: AAATGAGAATAATTTGCATTA
Locus tag: swp_4367
swp_4367 -81 6 AAATGAGAATAATTTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein, possibly porin
Shewanella baltica OS155 Sbal_2014 -93 5.4 AAATGCGAATTGTTTGCATTA
Shewanella denitrificans OS217 Sden_0638 -91 5.1 AAATACGAATAGTTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_4035 -106 5.6 TAATGATAATGGTTTGCATTA
Shewanella amazonensis SB2B Sama_0589 -84 5.1 CAATGCGAATCGTTTGCATTT
Shewanella loihica PV-4 Shew_3120 -84 5.7 TAATGATAATAGTTTGCATTA
Shewanella pealeana ATCC 700345 Spea_0712 -82 5.6 TAATGATAACGATTTGCATTA
Shewanella piezotolerans WP3 swp_4367 -81 6 AAATGAGAATAATTTGCATTA
Shewanella sediminis HAW-EB3 Ssed_3889 -83 5.6 AAATGATAACCGTTTGCATTA
Shewanella woodyi ATCC 51908 Swoo_3788 -83 5.4 GAATGATAACAATTTGCATTA
Position: -86
Score: 5
Sequence: AAATACAACCGATTATCATTT
Locus tag: swp_4927
swp_4927 -86 5 AAATACAACCGATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: Hypothetical outer membrane protein
Shewanella oneidensis MR-1 SO4700 -86 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp ANA-3 Shewana3_4052 -86 4.8 AAATCGAATCCATTCTCATTA
Shewanella sp MR-4 Shewmr4_3843 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp MR-7 Shewmr7_3936 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella baltica OS155 Sbal_0123 -86 4.5 AAATCGAATCAATTCGCATTA
Shewanella denitrificans OS217 Sden_3594 -123 4.7 AAATAAGACTGGTTTGTATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -80 5.3 AAACGAGACTGATTATCATTT
Shewanella loihica PV-4 Shew_3658 -83 5.3 AAATGCAACCAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4066 7 5 AAATACGAGCTATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_0192 -87 4.4 AAATACGTCCCATTATCATTT
Shewanella piezotolerans WP3 swp_4927 -86 5 AAATACAACCGATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_0144 -97 5.5 AAATGGGAAGTGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0123 -85 5.2 AAATACAAAGCGTTATCATTT
Position: -84
Score: 5.7
Sequence: GAATGAGAATCAATATCATTT
Locus tag: swp_4957
swp_4957 -84 5.7 GAATGAGAATCAATATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4957
Ortholog function: Outer membrane receptor protein, mostly Fe transport
Shewanella piezotolerans WP3 swp_4957 -84 5.7 GAATGAGAATCAATATCATTT
Position: -46
Score: 6.1
Sequence: AAATGATAATCGTTATCATCT
Locus tag: swp_5137
swp_5137 -46 6.1 AAATGATAATCGTTATCATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4740
Ortholog function: Conserved hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO4740 -60 6 TAATGAGAATTGTTATCATCT
Shewanella putrefaciens CN-32 Sputcn32_3921 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp W3-18-1 Sputw3181_4047 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp ANA-3 Shewana3_4124 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-4 Shewmr4_3919 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-7 Shewmr7_4011 -60 6 TAATGAGAATTGTTATCATCT
Shewanella baltica OS155 Sbal_4341 -59 6 TAATGAGAATTGTTATCATCT
Shewanella denitrificans OS217 Sden_3706 -50 6 TATTGATAACGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4031 -46 6 TAATGAGAACTGTTATCATTT
Shewanella amazonensis SB2B Sama_3636 -50 5.9 AAGTGATAACTATTATCATTT
Shewanella loihica PV-4 Shew_3815 -46 6.5 AAATGATAATAATTATCATTT
Shewanella pealeana ATCC 700345 Spea_4226 -47 5.9 AAATGAGAAGCGTTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_4274 -47 6.3 AAATGATAACCATTATCATTT
Shewanella piezotolerans WP3 swp_5137 -46 6.1 AAATGATAATCGTTATCATCT
Shewanella sediminis HAW-EB3 Ssed_4479 -47 6.1 AGATGAGAATAGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4887 -50 6.3 AAATGAGAACCATTATCATTT
Position: -68
Score: 5.6
Sequence: GAATAAAAACAATTCTCATTT
Locus tag: swp_5150
swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
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