Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_3961
Regulated genes 17
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -226
Score: 4.7
Sequence: TACTCCTAAAGTAGTA
Locus tag: swp_0220
swp_0220 -226 4.7 TACTCCTAAAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3897
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella frigidimarina NCIMB 400 Sfri_3897 -123 3.9 TACCTACAATTGATTA
Shewanella pealeana ATCC 700345 Spea_3939 -158 4.6 TACCTCCAAAGTAATA
Shewanella halifaxensis HAW-EB4 Shal_0331 -157 4.1 CACTTCTAAAGTAGTA
Shewanella piezotolerans WP3 swp_0220 -226 4.7 TACTCCTAAAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0273 -159 4.7 TACCTCTAAAGTTGTA
Position: -293
Score: 5.2
Sequence: TACCTCTTAATGGGTA
Locus tag: swp_0614
swp_0614 -293 5.2 TACCTCTTAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_0614
Ortholog function: Cytochrome c552 precursor (EC 1.7.2.2)
Shewanella piezotolerans WP3 swp_0614 -293 5.2 TACCTCTTAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_3744 -173 5.2 TACCTCTTTAGGGATA
Position: -110
Score: 4.6
Sequence: TATCTCTTTAGTAGTA
Locus tag: swp_0694
swp_0694 -110 4.6 TATCTCTTTAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3600
Ortholog function: Predicted deca-heme c-type cytochrome
Shewanella pealeana ATCC 700345 Spea_3600 -109 4.6 TATCTCTTTAGTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3689 -109 4.7 TATCTCTTTAGTGGTA
Shewanella piezotolerans WP3 swp_0694 -110 4.6 TATCTCTTTAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0742 -109 4.7 TATCCCTTTATGGGTA
Position: -18
Score: 4.8
Sequence: TACCTATAAAGGGATA
Locus tag: swp_0896
swp_0896 -18 4.8 TACCTATAAAGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: Decaheme cytochrome c MtrF
Shewanella oneidensis MR-1 SO1659 -80 4.9 TACCACTTTATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1380 -77 4.9 TACCACTTTATAAGTA
Shewanella sp W3-18-1 Sputw3181_2721 -77 4.9 TACCACTTTATAAGTA
Shewanella sp ANA-3 Shewana3_2787 -77 4.9 TACCACTTTATAAGTA
Shewanella sp MR-4 Shewmr4_2613 -78 4.9 TACCACTTTATAAGTA
Shewanella sp MR-7 Shewmr7_2680 -78 4.9 TACCACTTTATAAGTA
Shewanella baltica OS155 Sbal_1478 -78 4.7 TACCACTTTGTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Shewanella amazonensis SB2B Sama_2228 -77 4.5 TACCACTTTATATATA
Shewanella loihica PV-4 Shew_0918 -21 4.8 TACCTATAAAGGGATA
Shewanella piezotolerans WP3 swp_0896 -18 4.8 TACCTATAAAGGGATA
Position: -165
Score: 5
Sequence: TACCCATTTATAGGTA
Position: -151
Score: 4.9
Sequence: TACCTCTAAATTAGTA
Locus tag: swp_1107
swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella loihica PV-4 Shew_2655 -166 5 TACCACTTTAGAGATA
-152 4.3 TACCTCTAATTCAGTA
Shewanella pealeana ATCC 700345 Spea_3233 -165 4.5 TACCTACTTGTAGGTA
-151 4.4 TATCCCTAAATTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3305 -165 4.3 TACCTATTTGTGTGTA
-151 4.6 TACCTCTAAATCGGTA
Shewanella piezotolerans WP3 swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Shewanella sediminis HAW-EB3 Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Shewanella woodyi ATCC 51908 Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Position: -236
Score: 3.9
Sequence: TACCACAATAGACATA
Locus tag: swp_1238
swp_1238 -236 3.9 TACCACAATAGACATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Polysulfide reductase, subunit A
Shewanella oneidensis MR-1 SO4062 -179 5 TACCCCTTTAGGAATA
Shewanella sp ANA-3 Shewana3_3619 -181 5.1 TACCCCTTTAGGGATA
Shewanella amazonensis SB2B Sama_3177 -331 4.8 TACCTCTTTAGGGGTG
Shewanella piezotolerans WP3 swp_1238 -236 3.9 TACCACAATAGACATA
Position: -197
Score: 4.3
Sequence: TACCTCTTTGTGAGTG
Locus tag: swp_2922
swp_2922 -197 4.3 TACCTCTTTGTGAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasA
Ortholog function: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
Shewanella frigidimarina NCIMB 400 Sfri_1505 -203 5.3 TACCTCTTTATAGGTA
Shewanella piezotolerans WP3 swp_2922 -197 4.3 TACCTCTTTGTGAGTG
Position: -184
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: swp_3277
swp_3277 -184 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella halifaxensis HAW-EB4 Shal_2783 -182 5.1 TACCCCTAAAGAAATA
Shewanella piezotolerans WP3 swp_3277 -184 5.1 TACCCCTAAAGAAATA
Position: -193
Score: 5.1
Sequence: TACCTCTTTATAAATA
Locus tag: swp_3278
swp_3278 -193 5.1 TACCTCTTTATAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -136
Score: 4.6
Sequence: TATCTCTAAATGGGTA
Locus tag: swp_3395
swp_3395 -136 4.6 TATCTCTAAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -158
Score: 4.5
Sequence: TACCTACAAAGGAATA
Locus tag: swp_3404
swp_3404 -158 4.5 TACCTACAAAGGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS2
Ortholog function: NnrS protein involved in response to NO
Shewanella loihica PV-4 Shew_0504 -177 4.4 TGCCTATAAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_1227 -155 4.4 TACTCATTAAGATATA
Shewanella halifaxensis HAW-EB4 Shal_1261 -153 4.6 TACCTATAAAGATATA
Shewanella piezotolerans WP3 swp_3404 -158 4.5 TACCTACAAAGGAATA
Position: -34
Score: 4.3
Sequence: TACCCCCTTCGATATA
Locus tag: swp_3461
swp_3461 -34 4.3 TACCCCCTTCGATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsE
Ortholog function: Periplasmic decaheme cytochrome c, DsmE
Shewanella halifaxensis HAW-EB4 Shal_2928 -69 4.3 TACCCCCTTCGATATA
Shewanella piezotolerans WP3 swp_3461 -34 4.3 TACCCCCTTCGATATA
Position: -96
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: swp_3958
swp_3958 -96 5 TACCCCATAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -111
Score: 4.9
Sequence: TACCCCTTGTGAGGTA
Locus tag: swp_4456
swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -260
Score: 5.1
Sequence: TACCCCTTTAGGGATA
Locus tag: swp_4514
swp_4514 -260 5.1 TACCCCTTTAGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
© 2009-2020 RegPrecise