Propagation of Crp regulog to Idiomarina baltica OS145
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Idiomarina baltica OS145 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 20 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -101
Score: 4 Sequence: ACTTTTGATCGGGATCAAATCA
Locus tag: OS145_02680
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| OS145_02680 | -101 | 4 | ACTTTTGATCGGGATCAAATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3890 | ||||
| Ortholog function: methyl-accepting chemotaxis protein | ||||
| Shewanella oneidensis MR-1 | SO3890 | -196 | 4.6 | CCATGTGATCTGGTTCAAATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0776 | -185 | 4.4 | TTGTGTGACACGAATCAAGTTT |
| Shewanella sp W3-18-1 | Sputw3181_3399 | -185 | 4.4 | TTGTGTGACACGAATCAAGTTT |
| Shewanella sp ANA-3 | Shewana3_0739 | -181 | 4.9 | CTGTGTGATGTGGTTCAAATTT |
| Shewanella sp MR-4 | Shewmr4_3223 | -198 | 4.3 | CCCTGTGATCTAGCTCAAATTT |
| Shewanella sp MR-7 | Shewmr7_0766 | -198 | 4.3 | CCCTGTGATCTAGCTCAAATTT |
| Shewanella baltica OS155 | Sbal_3564 | -196 | 3.7 | CTCTGTGATCTTGGTCGTATTC |
| Shewanella amazonensis SB2B | Sama_0550 | -128 | 4.7 | TAATTTGATGTGAATCAACTTT |
|
Position: -37
Score: 3.8 Sequence: TTTTGTTATGTTCAACGCTTAT
Locus tag: OS145_09063
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| OS145_09063 | -37 | 3.8 | TTTTGTTATGTTCAACGCTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutC | ||||
| Ortholog function: histidine utilization repressor | ||||
| Shewanella oneidensis MR-1 | SO0096 | -151 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0078 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp W3-18-1 | Sputw3181_3999 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp ANA-3 | Shewana3_0099 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella sp MR-4 | Shewmr4_0098 | -142 | 4.1 | TTATGTGAGCCAGCTTGTATTT |
| Shewanella sp MR-7 | Shewmr7_0093 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella baltica OS155 | Sbal_4253 | -177 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella loihica PV-4 | Shew_3758 | -138 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella pealeana ATCC 700345 | Spea_4170 | -106 | 3.8 | ATTTGTGAGCTAGCTTGTGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0072 | -106 | 3.9 | ATTTGTGAGCCCGCTTGTATTT |
| Shewanella piezotolerans WP3 | swp_0132 | -177 | 4.2 | ATTTGTGAGCTAGCTTGTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4448 | -150 | 4.1 | AGTTGTGATCCAACTTGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4839 | -201 | 4.1 | AAGTGTGATCCAACTTGTATTT |
|
Position: -125
Score: 3.7 Sequence: TCTTGTTATTTAAAACATAAAA
Locus tag: OS145_08357
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| OS145_08357 | -125 | 3.7 | TCTTGTTATTTAAAACATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prlC | ||||
| Ortholog function: Oligopeptidase A (EC 3.4.24.70) | ||||
| Shewanella oneidensis MR-1 | SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0087 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp W3-18-1 | Sputw3181_3978 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp ANA-3 | Shewana3_4051 | -136 | 4.6 | AATTGTGAACTGGTTCGCTTTT |
| Shewanella sp MR-4 | Shewmr4_3842 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella sp MR-7 | Shewmr7_3935 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella baltica OS155 | Sbal_0124 | -136 | 4.3 | AAATGCGAACGAGTTCACTTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3874 | -226 | 4 | AATTGGGATCTTAGTCACTCTA |
| Shewanella loihica PV-4 | Shew_3657 | -247 | 3.8 | ATTTGCGATCCGCTTGGCAATA |
| Shewanella pealeana ATCC 700345 | Spea_4065 | -143 | 3.9 | AAACTTGATTAAGATCGCGGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Shewanella piezotolerans WP3 | swp_4926 | -311 | 3.7 | ATTTGCGAGGCGCTTTGCAATA |
| -261 | 3.6 | AAAATTGACTTTAGTCAAAGAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0145 | -210 | 4.1 | ATTTGAGAAGTAATTCTCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0124 | -172 | 4.2 | TTTTTTGAGCTGGGTCAAAGTA |
|
Position: 0
Score: 4.1 Sequence: ATGAGTGATTATAAGCACACAT
Locus tag: OS145_11112
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| OS145_11112 | 0 | 4.1 | ATGAGTGATTATAAGCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ileS | ||||
| Ortholog function: isoleucyl-tRNA synthetase (EC 6.1.1.5) | ||||
| Shewanella oneidensis MR-1 | SO3532 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1059 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp W3-18-1 | Sputw3181_3106 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp ANA-3 | Shewana3_3136 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-4 | Shewmr4_2957 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-7 | Shewmr7_3039 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella baltica OS155 | Sbal_1054 | -49 | 4.6 | TTTTTTGAGATGTATCACCTAA |
| Shewanella amazonensis SB2B | Sama_0924 | -138 | 3.9 | TATTGTTACTGGCAGCAAACAA |
|
Position: -20
Score: 3.8 Sequence: ATTTTTAATGGAGAAAACATAT
Locus tag: OS145_12280
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| OS145_12280 | -20 | 3.8 | ATTTTTAATGGAGAAAACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO3089 | -131 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2460 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_1548 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp ANA-3 | Shewana3_1460 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-4 | Shewmr4_1407 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-7 | Shewmr7_1472 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella baltica OS155 | Sbal_2761 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella denitrificans OS217 | Sden_1529 | -109 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -104 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella amazonensis SB2B | Sama_2168 | -112 | 3.6 | AAGTTAGAATCGGGTCACACTT |
| Shewanella loihica PV-4 | Shew_2426 | -134 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_2599 | -116 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2671 | -119 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3140 | -122 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1628 | -151 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3027 | -138 | 4.1 | AAGTTAGAATCAGATCACATTT |