Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Idiomarina baltica OS145

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Idiomarina baltica OS145
Orthologous TF(s) No orthologous TFs found
Regulated genes 20
Built upon 2713 sites [see more]
Predicted regulatory interactions in Idiomarina baltica OS145
Locus tag Position Score Sequence
Position: -101
Score: 4
Sequence: ACTTTTGATCGGGATCAAATCA
Locus tag: OS145_02680
OS145_02680 -101 4 ACTTTTGATCGGGATCAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3890
Ortholog function: methyl-accepting chemotaxis protein
Shewanella oneidensis MR-1 SO3890 -196 4.6 CCATGTGATCTGGTTCAAATTT
Shewanella putrefaciens CN-32 Sputcn32_0776 -185 4.4 TTGTGTGACACGAATCAAGTTT
Shewanella sp W3-18-1 Sputw3181_3399 -185 4.4 TTGTGTGACACGAATCAAGTTT
Shewanella sp ANA-3 Shewana3_0739 -181 4.9 CTGTGTGATGTGGTTCAAATTT
Shewanella sp MR-4 Shewmr4_3223 -198 4.3 CCCTGTGATCTAGCTCAAATTT
Shewanella sp MR-7 Shewmr7_0766 -198 4.3 CCCTGTGATCTAGCTCAAATTT
Shewanella baltica OS155 Sbal_3564 -196 3.7 CTCTGTGATCTTGGTCGTATTC
Shewanella amazonensis SB2B Sama_0550 -128 4.7 TAATTTGATGTGAATCAACTTT
Position: -37
Score: 3.8
Sequence: TTTTGTTATGTTCAACGCTTAT
Locus tag: OS145_09063
OS145_09063 -37 3.8 TTTTGTTATGTTCAACGCTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1 SO0096 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0078 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3999 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0099 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0098 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0093 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4253 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3758 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4170 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0072 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4839 -201 4.1 AAGTGTGATCCAACTTGTATTT
Position: -125
Score: 3.7
Sequence: TCTTGTTATTTAAAACATAAAA
Locus tag: OS145_08357
OS145_08357 -125 3.7 TCTTGTTATTTAAAACATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 SO4699 -136 4.2 AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32 Sputcn32_0087 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1 Sputw3181_3978 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3 Shewana3_4051 -136 4.6 AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4 Shewmr4_3842 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7 Shewmr7_3935 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155 Sbal_0124 -136 4.3 AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400 Sfri_3874 -226 4 AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4 Shew_3657 -247 3.8 ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345 Spea_4065 -143 3.9 AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4 Shal_0193 -192 4.4 ATTTGCGACGTGGTTTACAATA
-142 4.2 AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3 swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3 Ssed_0145 -210 4.1 ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908 Swoo_0124 -172 4.2 TTTTTTGAGCTGGGTCAAAGTA
Position: 0
Score: 4.1
Sequence: ATGAGTGATTATAAGCACACAT
Locus tag: OS145_11112
OS145_11112 0 4.1 ATGAGTGATTATAAGCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ileS
Ortholog function: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Shewanella oneidensis MR-1 SO3532 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32 Sputcn32_1059 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1 Sputw3181_3106 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3 Shewana3_3136 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4 Shewmr4_2957 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7 Shewmr7_3039 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155 Sbal_1054 -49 4.6 TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B Sama_0924 -138 3.9 TATTGTTACTGGCAGCAAACAA
Position: -20
Score: 3.8
Sequence: ATTTTTAATGGAGAAAACATAT
Locus tag: OS145_12280
OS145_12280 -20 3.8 ATTTTTAATGGAGAAAACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT