Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Idiomarina baltica OS145

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Idiomarina baltica OS145
Orthologous TF(s) OS145_00972
Regulated genes 8
Built upon 505 sites [see more]
Predicted regulatory interactions in Idiomarina baltica OS145
Locus tag Position Score Sequence
Position: -52
Score: 6
Sequence: TAATGAGAACAATTATCATCT
Position: -17
Score: 5.5
Sequence: AAATGATAAGGATTCTCATGT
Locus tag: OS145_03090
OS145_03090 -52 6 TAATGAGAACAATTATCATCT
-17 5.5 AAATGATAAGGATTCTCATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -39
Score: 6
Sequence: AAATAAAAACTATTCTCATTT
Locus tag: OS145_04633
OS145_04633 -39 6 AAATAAAAACTATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: irgA
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_4523 -50 6.1 TATTGAAAATTATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_3503 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_0403 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp ANA-3 Shewana3_3929 -49 6.1 TATTGAAAATTATTATCATTT
Shewanella baltica OS155 Sbal_0217 -52 5.9 TATTGAAAATTGTTCTCATTT
Position: -190
Score: 5
Sequence: AAATAAGAATGATTATGTTTT
Position: -162
Score: 5.7
Sequence: AGTTGATAATCATTCTTATTT
Position: -63
Score: 5.4
Sequence: AAACGCGAATCGTTTTCATTT
Locus tag: OS145_01627
OS145_01627 -190 5 AAATAAGAATGATTATGTTTT
-162 5.7 AGTTGATAATCATTCTTATTT
-63 5.4 AAACGCGAATCGTTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -82
Score: 5.7
Sequence: AAATAAGAATGATTATCAACT
Locus tag: OS145_01632
OS145_01632 -82 5.7 AAATAAGAATGATTATCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1841
Ortholog function: TonB-dependent siderophore receptor
Shewanella putrefaciens CN-32 Sputcn32_1841 -85 5.2 TAATACGAATTGTTATCAATA
-59 5.7 TATTGATAATTGTTTTCAATT
Shewanella sp W3-18-1 Sputw3181_2168 -85 5.2 TAATACGAATTGTTATCAATA
-59 5.7 TATTGATAATTGTTTTCAATT
Position: -64
Score: 5.3
Sequence: AATTGCGAATTATTCGTATTT
Locus tag: OS145_08648
OS145_08648 -64 5.3 AATTGCGAATTATTCGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -78
Score: 5.4
Sequence: AAATGCAAATAGTTTTCGTTT
Locus tag: OS145_06444
OS145_06444 -78 5.4 AAATGCAAATAGTTTTCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0719
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO0719 -40 4.9 AGGTAGGAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2929 -43 5.8 AAAAGAGAATAATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3020 -42 5.8 AAAGGAGAATAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3638 -42 5.5 TAAGGATAATAATTCTCATTA
Position: -81
Score: 5.4
Sequence: AAACGAAAACTATTTGCATTT
Locus tag: OS145_06449
OS145_06449 -81 5.4 AAACGAAAACTATTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmuB
Ortholog function: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Shewanella oneidensis MR-1 SO3673 -97 5.7 AAATAGAAATCATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_0962 -31 5.2 AAATGATAATTATCATGATTA
Shewanella sp ANA-3 Shewana3_3239 -98 6 AAATGGAAATCATTATCATTT
Shewanella denitrificans OS217 Sden_0786 -66 6.5 AAATGAAAATCATTATCATTT
Shewanella pealeana ATCC 700345 Spea_3331 -206 6.5 AAATGAAAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_3403 -207 6.5 AAATGAAAATCATTATCATTT
Shewanella piezotolerans WP3 swp_3982 -183 6.5 AAATGAAAATCATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4008 -80 6.5 AAATGAAAATCATTATCATTT
© 2009-2020 RegPrecise