Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HypR regulog to Shewanella benthica KT99

Reference regulog properties
Source regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella benthica KT99
Orthologous TF(s) KT99_14495
Regulated genes 3
Built upon 96 sites [see more]
Predicted regulatory interactions in Shewanella benthica KT99
Locus tag Position Score Sequence
Position: -35
Score: 5.2
Sequence: ATTGTATACAAA
Locus tag: KT99_04712
KT99_04712 -35 5.2 ATTGTATACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: colA1
Ortholog function: Microbial collagenase, secreted (EC 3.4.24.3)
Shewanella amazonensis SB2B Sama_1077 -38 5 ATTGCATACAAT
Shewanella loihica PV-4 Shew_2743 -51 5 ATTTTATACAAA
Shewanella pealeana ATCC 700345 Error

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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