Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Shewanella benthica KT99

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella benthica KT99
Orthologous TF(s) KT99_00987
Regulated genes 14
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella benthica KT99
Locus tag Position Score Sequence
Position: -171
Score: 4.5
Sequence: TACCTATTTAGGTATA
Locus tag: KT99_04039
KT99_04039 -171 4.5 TACCTATTTAGGTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA2
Ortholog function: Nitrite reductase, cytochrome c(552)
Shewanella loihica PV-4 Shew_0505 -177 4.4 TGCCTATAAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_1228 -155 4.4 TACTCATTAAGATATA
Shewanella halifaxensis HAW-EB4 Shal_1262 -153 4.6 TACCTATAAAGATATA
Shewanella piezotolerans WP3 swp_3403 -158 4.5 TACCTACAAAGGAATA
Position: 14
Score: 3.7
Sequence: TAATACTTTATTATTA
Locus tag: KT99_17890
KT99_17890 14 3.7 TAATACTTTATTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3056
Ortholog function: Flavocytochrome c, heme submit
Shewanella oneidensis MR-1 SO3056 -77 4.3 TACCTCCTTTTAGGTG
Shewanella loihica PV-4 Shew_2279 -107 3.8 CCCCTCTTTTTAGGTA
Position: -225
Score: 4.2
Sequence: CACCTCCTATGAAATA
Locus tag: KT99_17900
KT99_17900 -225 4.2 CACCTCCTATGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3058
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella oneidensis MR-1 SO3058 -77 4.3 TACCTCCTTTTAGGTG
Shewanella putrefaciens CN-32 Sputcn32_2432 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp W3-18-1 Sputw3181_1576 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp ANA-3 Shewana3_1489 -77 4.5 TACCTCTTTTTAGGTG
Shewanella loihica PV-4 Shew_2281 -107 3.8 CCCCTCTTTTTAGGTA
Shewanella halifaxensis HAW-EB4 Shal_3447 -105 4 TATCGCTAATTAGGTA
Position: -230
Score: 4
Sequence: TACCGATTATTTGATA
Locus tag: KT99_17910
KT99_17910 -230 4 TACCGATTATTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3059
Ortholog function: Predicted transcriptional activator
Shewanella oneidensis MR-1 SO3059 -104 3.9 CACCTAAAAGGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_2433 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_1575 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sp ANA-3 Shewana3_1488 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sediminis HAW-EB3 Ssed_0346 -230 4.1 TAACGCTTTTTAAGTA
Position: -212
Score: 4.7
Sequence: TACCCCTAAGTGAGTA
Locus tag: KT99_00992
KT99_00992 -212 4.7 TACCCCTAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -209
Score: 4.8
Sequence: TACCACTTTATAAATA
Locus tag: KT99_05767
KT99_05767 -209 4.8 TACCACTTTATAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -223
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: KT99_05772
KT99_05772 -223 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella sediminis HAW-EB3 Ssed_1526 -209 5.1 TACCCCTAAAGAAATA
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