Propagation of CodY regulog to Geobacillus thermodenitrificans NG80-2
| Source regulog: | CodY - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Geobacillus thermodenitrificans NG80-2 |
| Orthologous TF(s) | GTNG_1068 |
| Regulated genes | 39 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -84
Score: 4.7 Sequence: AATTTTTTGAAAAAA
Locus tag: GTNG_0042
|
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| GTNG_0042 | -84 | 4.7 | AATTTTTTGAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spoVG | ||||
| Ortholog function: Stage V sporulation protein G required for spore cortex synthesis | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU00490 | -98 | 4.4 | TTTTTTCAAAAAATA |
| Geobacillus kaustophilus HTA426 | GK0042 | -96 | 4.6 | AATTTATAAAAAATT |
| Bacillus cereus ATCC 14579 | BC0053 | -87 | 5.1 | AATTTTTAAAAAATT |
|
Position: -85
Score: 4.3 Sequence: CTTTTTCAAAAAATT
Position: -65
Score: 4.3 Sequence: TCTTTTTTAAAAATT
Locus tag: GTNG_0559
|
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| GTNG_0559 | -85 | 4.3 | CTTTTTCAAAAAATT | |
| -65 | 4.3 | TCTTTTTTAAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_010260 | -75 | 4.4 | AAAAATCAAAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2293 | -91 | 4.5 | TATTTTTTAAAAAAT |
| -90 | 4.7 | ATTTTTTAAAAAATT | ||
|
Position: -50
Score: 4.7 Sequence: AATTTTTAGACAATA
Locus tag: GTNG_0580
|
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| GTNG_0580 | -50 | 4.7 | AATTTTTAGACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: azlC | ||||
| Ortholog function: Branched-chain amino acid permease (azaleucine resistance) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2051 | -29 | 4.9 | AATTTTATGAAAATA |
| Geobacillus kaustophilus HTA426 | GK0673 | -51 | 4.7 | AATTTTTAGACAATA |
|
Position: -83
Score: 4.2 Sequence: ATTTTTTTCAAAATA
Position: -81
Score: 4.2 Sequence: TTTTTTCAAAATATA
Locus tag: GTNG_0585
|
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| GTNG_0585 | -83 | 4.2 | ATTTTTTTCAAAATA | |
| -81 | 4.2 | TTTTTTCAAAATATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: comK | ||||
| Ortholog function: Competence transcription factor | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU10420 | -225 | 4.5 | AATTTTTAGACAACT |
| Bacillus amyloliquefaciens FZB42 | RBAM_010600 | -88 | 4.2 | TATATTCAAAAAAAA |
| Bacillus pumilus SAFR-032 | BPUM_0978 | -222 | 5 | AATTTTTAGACAATT |
| Bacillus licheniformis DSM 13 | BLi01119 | -205 | 5.3 | AATTTTTAGAAAATT |
| Oceanobacillus iheyensis HTE831 | OB1177 | -94 | 4.5 | TTTATTCTAAAAATT |
|
Position: -340
Score: 4.3 Sequence: ATTTTTTTATAAATT
Locus tag: GTNG_0745
|
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| GTNG_0745 | -340 | 4.3 | ATTTTTTTATAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metI | ||||
| Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11870 | -297 | 4.6 | AATTATTAGAAATTT |
| -214 | 4.3 | AACAATCAGAAAATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_011930 | -314 | 4.6 | AATTATTAGAAATTT |
| Bacillus pumilus SAFR-032 | BPUM_1119 | -297 | 4.4 | AAAATACAGAAAATT |
| -287 | 4.1 | AAATTTCAATTAATT | ||
| Bacillus licheniformis DSM 13 | BLi01289 | -164 | 4 | AACAATCAGAATATT |
| Anoxybacillus flavithermus WK1 | Aflv_2067 | -228 | 4.4 | ATTTTTCGGAAAATA |
| -200 | 4.6 | AAAAATCAGAAAATT | ||
| Geobacillus kaustophilus HTA426 | GK0866 | -341 | 4.5 | AAATTTAAAAAAATT |
| Bacillus cereus ATCC 14579 | BC4253 | -344 | 4.4 | AATTTTTTAATAAAT |
| Paenibacillus sp. JDR-2 | Pjdr2_4798 | -6 | 4.4 | AACTTTATGAAAATT |
|
Position: -97
Score: 4.2 Sequence: AAATTTCTAAAAAAA
Locus tag: GTNG_1225
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| GTNG_1225 | -97 | 4.2 | AAATTTCTAAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutU | ||||
| Ortholog function: Urocanate hydratase (EC 4.2.1.49) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU39360 | -25 | 4.1 | AGTTATCAGAATTTT |
| Bacillus amyloliquefaciens FZB42 | RBAM_036420 | -36 | 4.5 | AGTTATCAGAATATT |
| Geobacillus kaustophilus HTA426 | GK1367 | -102 | 4.3 | AAAATTCAAAAAAAT |
| Bacillus cereus ATCC 14579 | BC3651 | -36 | 4.8 | AATATTCAAATAATT |
|
Position: -223
Score: 4.8 Sequence: AATTATCAGAAATTT
Locus tag: GTNG_2184
|
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| GTNG_2184 | -223 | 4.8 | AATTATCAGAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU23070 | -44 | 4.5 | AATTATCAGATATTT |
| Bacillus amyloliquefaciens FZB42 | RBAM_021220 | -44 | 4.5 | AATTATCAGATATTT |
| Bacillus pumilus SAFR-032 | BPUM_2039 | -45 | 4.5 | AATTATCAGATATTT |
| Bacillus licheniformis DSM 13 | BLi02446 | -43 | 4.5 | AATTATCAGATATTT |
| Anoxybacillus flavithermus WK1 | Aflv_1055 | -47 | 4.8 | AATTATCAGAAATTT |
| Geobacillus kaustophilus HTA426 | GK2247 | -86 | 4.8 | AATTATCAGAAATTT |
|
Position: -235
Score: 4.1 Sequence: AATCTTTTGACAAAT
Position: -202
Score: 4.3 Sequence: AAAAATCTGATAATT
Locus tag: GTNG_2660
|
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| GTNG_2660 | -235 | 4.1 | AATCTTTTGACAAAT | |
| -202 | 4.3 | AAAAATCTGATAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citZ | ||||
| Ortholog function: Citrate synthase (si) (EC 2.3.3.1) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU29140 | -224 | 4.3 | AAATGTCTGATTATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_026180 | -224 | 4.2 | ATTAATCAGATTATT |
| Bacillus pumilus SAFR-032 | BPUM_2556 | -210 | 4.3 | AAATGTCTGATTATT |
| Bacillus licheniformis DSM 13 | BLi03062 | -225 | 4.5 | AAATGTCTGATAATT |
| Anoxybacillus flavithermus WK1 | Aflv_0504 | -209 | 4.3 | AAAAGTCTGATAATT |
| Geobacillus kaustophilus HTA426 | GK2736 | -201 | 4.3 | AAAAGTCTGATAATT |
| Oceanobacillus iheyensis HTE831 | OB2168 | -222 | 4.3 | AAATATTAAAAAATT |
|
Position: -103
Score: 4.5 Sequence: AAATTTCAAAAAAAT
Position: -78
Score: 4.9 Sequence: AATATTTTAAAAATT
Locus tag: GTNG_2711
|
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| GTNG_2711 | -103 | 4.5 | AAATTTCAAAAAAAT | |
| -78 | 4.9 | AATATTTTAAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acsA | ||||
| Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU29680 | -78 | 4.6 | TATATTTTAAAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_026800 | -73 | 4.6 | TATATTTTAAAAATT |
| Bacillus pumilus SAFR-032 | BPUM_2616 | -77 | 4.6 | AGTTTTTTAAAAATT |
| Bacillus licheniformis DSM 13 | BLi03119 | -74 | 4.8 | TATTTTTTAAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_0462 | -77 | 5.1 | AATTTTTTAAAAATT |
| Geobacillus kaustophilus HTA426 | GK2806 | -102 | 4.4 | AAATTTCAAAAAAGT |
| -77 | 4.9 | AATATTTTAAAAATT | ||
| Bacillus cereus ATCC 14579 | BC4659 | -69 | 4.8 | AATATACTGAAAATT |
|
Position: -199
Score: 4.9 Sequence: AATTTTTAAAATATT
Position: -174
Score: 4.5 Sequence: ATTTTTTTGAAATTT
Locus tag: GTNG_2712
|
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| GTNG_2712 | -199 | 4.9 | AATTTTTAAAATATT | |
| -174 | 4.5 | ATTTTTTTGAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acuA | ||||
| Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU29690 | -97 | 4.6 | AATTTTTAAAATATA |
| Bacillus amyloliquefaciens FZB42 | RBAM_026810 | -100 | 4.6 | AATTTTTAAAATATA |
| Bacillus pumilus SAFR-032 | BPUM_2617 | -93 | 4.6 | AATTTTTAAAAAACT |
| Bacillus licheniformis DSM 13 | BLi03120 | -96 | 4.8 | AATTTTTAAAAAATA |
| Anoxybacillus flavithermus WK1 | Aflv_0461 | -101 | 5.1 | AATTTTTAAAAAATT |
| Geobacillus kaustophilus HTA426 | GK2807 | -112 | 4.9 | AATTTTTAAAATATT |
| -87 | 4.4 | ACTTTTTTGAAATTT | ||
| Bacillus cereus ATCC 14579 | BC4660 | -110 | 4.8 | AATTTTCAGTATATT |
| Oceanobacillus iheyensis HTE831 | OB2221 | -85 | 4.6 | AAATTTCAAAAAATA |
|
Position: -258
Score: 4.4 Sequence: TTTTTACAGAAAATT
Locus tag: GTNG_2902
|
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| GTNG_2902 | -258 | 4.4 | TTTTTACAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yuiB | ||||
| Ortholog function: Hypothetical membrane protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32080 | -36 | 4.9 | TATTATCAGAAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_029130 | -34 | 4.9 | TATTATCAGAAAATT |
| Bacillus licheniformis DSM 13 | BLi03390 | -35 | 4.9 | TATTATCAGAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2400 | -35 | 5.2 | AATTATCTGAAAATT |
| Geobacillus kaustophilus HTA426 | GK2950 | -54 | 4.4 | TTTTTACAGAAAATT |
| Bacillus halodurans C-125 | BH3405 | -47 | 4.3 | AAAATTCTGATAATA |
|
Position: -233
Score: 4.4 Sequence: TTTTTTTAGACAATT
Locus tag: GTNG_3285
|
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| GTNG_3285 | -233 | 4.4 | TTTTTTTAGACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppB | ||||
| Ortholog function: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) | ||||
| Bacillus halodurans C-125 | BH0029 | -46 | 4.5 | ATTTGTCAAAATATT |
| Oceanobacillus iheyensis HTE831 | OB3068 | -112 | 4.5 | TATTTTTACAAAATT |
|
Position: -160
Score: 4.6 Sequence: AATTTACAAAATATT
Locus tag: GTNG_3384
|
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| GTNG_3384 | -160 | 4.6 | AATTTACAAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter (TC 2.A.21.2.1) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03220 | -106 | 4.1 | AATAATCAGAATCTT |
| -89 | 4.5 | TATTTTGAGAATATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_003460 | -23 | 4.8 | TATTTTTAGAATATT |
| Bacillus licheniformis DSM 13 | BLi00375 | -85 | 4.5 | ATTAGTCTAAAAATT |
| Geobacillus kaustophilus HTA426 | GK3452 | -158 | 4.8 | AATTTACAGAATATT |
| Bacillus cereus ATCC 14579 | BC1231 | -106 | 4.6 | ACATTTCTGAAAATT |
| -76 | 4.6 | ATTTTTCAGAATAAT | ||
|
Position: -264
Score: 4.6 Sequence: AATATTTTGTAAATT
Locus tag: GTNG_3385
|
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| GTNG_3385 | -264 | 4.6 | AATATTTTGTAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnH | ||||
| Ortholog function: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2792 | -122 | 4.7 | TATTTTTATAAAATT |
| Geobacillus kaustophilus HTA426 | GK3453 | -264 | 4.8 | AATATTCTGTAAATT |