Propagation of NrdR regulog to Shewanella baltica OS195
| Source regulog: | NrdR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella baltica OS195 |
| Orthologous TF(s) | Sbal195_3304 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -80
Score: 4.4 Sequence: GCTCTACATATTGTGT
Position: -49
Score: 5 Sequence: TCACTAGATGTAGTGT
Locus tag: Sbal195_1687
|
||||
| Sbal195_1687 | -80 | 4.4 | GCTCTACATATTGTGT | |
| -49 | 5 | TCACTAGATGTAGTGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Shewanella oneidensis MR-1 | SO2834 | -79 | 4.3 | TGCCTACATATTGTGT |
| -48 | 5.2 | TCACTATATGTAGTGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1540 | -79 | 4.4 | ACGCTATATATTGTGC |
| -48 | 5.2 | TCACTATATGTAGTGT | ||
| Shewanella sp W3-18-1 | Sputw3181_2559 | -79 | 4.4 | ACGCTATATATTGTGC |
| -48 | 5.2 | TCACTATATGTAGTGT | ||
| Shewanella sp ANA-3 | Shewana3_2603 | -79 | 4.3 | TGCCTAGATATTGTGT |
| -48 | 5 | GCACTATATGTAGTGT | ||
| Shewanella sp MR-4 | Shewmr4_2441 | -79 | 4.4 | TGCCTAGATATAGTGT |
| -48 | 5.5 | ACACTATATGTAGTGT | ||
| Shewanella sp MR-7 | Shewmr7_2511 | -79 | 4.4 | TGCCTACATATAGTGT |
| -48 | 5.5 | ACACTATATGTAGTGT | ||
| Shewanella baltica OS155 | Sbal_1665 | -80 | 4.4 | GCTCTACATATTGTGT |
| -49 | 5 | TCACTAGATGTAGTGT | ||
| Shewanella denitrificans OS217 | Sden_1419 | -124 | 4.1 | GCACAGCATATTGTGT |
| -93 | 3.6 | AgtCTATATgTAGatT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2443 | -64 | 4.7 | ACACTCTATCTTGTGT |
| -33 | 4 | GCGCTATATATAGTGC | ||
| Shewanella amazonensis SB2B | Sama_1275 | -72 | 4.6 | ACACTACATTTTGTAT |
| -41 | 4.1 | GCTCAACATATAGTGA | ||
| Shewanella loihica PV-4 | Shew_2449 | -80 | 4.3 | GCGCTACATATTGTGT |
| -49 | 5.2 | ACACTATATATGGTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_2619 | -81 | 3.6 | gCgCcAcATATtGTGa |
| -50 | 5.1 | GCACTATATATAGTGT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2692 | -81 | 4.1 | ACGCCACATATTGTGA |
| -50 | 5.1 | GCACTATATATAGTGT | ||
| Shewanella piezotolerans WP3 | swp_3165 | -80 | 3.6 | gCgCcAcATATtGTGa |
| -49 | 5.3 | ATACTATATGTAGTGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1600 | -80 | 4.2 | ACGCAACATATTGTGC |
| -49 | 5.1 | ACACTATATGTGGTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3049 | -80 | 4.2 | ACGCAACATATTGTGC |
| -49 | 5.1 | ACACTATATGTGGTGT | ||
|
Position: -172
Score: 5 Sequence: ACACCATATCTTGTGT
Locus tag: Sbal195_2407
|
||||
| Sbal195_2407 | -172 | 5 | ACACCATATCTTGTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdA | ||||
| Ortholog function: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) | ||||
| Shewanella oneidensis MR-1 | SO2415 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2073 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella sp W3-18-1 | Sputw3181_1939 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella sp ANA-3 | Shewana3_1969 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella sp MR-4 | Shewmr4_1916 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella sp MR-7 | Shewmr7_2062 | -202 | 3.7 | CCTCACTATCTTGTAT |
| -171 | 5 | ACACCATATCTTGTGT | ||
| Shewanella baltica OS155 | Sbal_2059 | -203 | 3.7 | CCTCACTATCTTGTAT |
| -172 | 5 | ACACCATATCTTGTGT | ||
| Shewanella denitrificans OS217 | Sden_1952 | -336 | 3.7 | ACTCACTATCTTGTAG |
| -304 | 5.4 | ACACTATATCTTGTGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2133 | -254 | 3.7 | CCTCACTATCTTGTAT |
| -223 | 5 | ACACCATATCTTGTGT | ||
| Shewanella amazonensis SB2B | Sama_1728 | -126 | 3.7 | CCTCACTATCTTGTAT |
| -95 | 4.4 | GCACCATATCTTGTGT | ||
| Shewanella loihica PV-4 | Shew_1946 | -180 | 3.7 | CCTCACTATCTTGTAT |
| -149 | 5 | ACACCATATCTTGTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_2064 | -165 | 5.2 | ACACCATATATAGTGT |
| -163 | 4.2 | ACCATATATAGTGTGT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2036 | -165 | 5.2 | ACACCATATATAGTGT |
| -163 | 4.2 | ACCATATATAGTGTGT | ||
| Shewanella piezotolerans WP3 | swp_2478 | -50 | 3.9 | AAACACCATATATTGT |
| -48 | 5.1 | ACACCATATATTGTGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2306 | -164 | 5.2 | ACACCATATATAGTGT |
| -162 | 4.2 | ACCATATATAGTGTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_2303 | -165 | 5.2 | ACACCATATATAGTGT |
| -163 | 4.2 | ACCATATATAGTGTGT | ||