Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TreR regulog to Shewanella baltica OS223

Reference regulog properties
Source regulog: TreR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella baltica OS223
Orthologous TF(s) Sbal223_2960
Regulated genes 2
Built upon 11 sites [see more]
Predicted regulatory interactions in Shewanella baltica OS223
Locus tag Position Score Sequence
Position: -74
Score: 6.5
Sequence: TAATGCAATCGATTGCAAAA
Locus tag: Sbal223_2962
Sbal223_2962 -74 6.5 TAATGCAATCGATTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose phosphorylase (EC 2.4.1.64)
Shewanella woodyi ATCC 51908 Swoo_1437 -73 6.4 TTTTGCAATCGTTTGCAAAA
Position: -75
Score: 6.5
Sequence: TTTTGCAATCGATTGCATTA
Locus tag: Sbal223_2963
Sbal223_2963 -75 6.5 TTTTGCAATCGATTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily
Shewanella frigidimarina NCIMB 400 Sfri_3505 -72 6.5 AAATGCAAACGATTGCATTA
Shewanella woodyi ATCC 51908 Swoo_1438 -175 6.4 TTTTGCAAACGATTGCAAAA
© 2009-2020 RegPrecise