Propagation of Crp regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 54 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 21
Score: 3.7 Sequence: TATTCTGATAATGGTCAATTAA
Locus tag: Patl_0013
|
||||
| Patl_0013 | 21 | 3.7 | TATTCTGATAATGGTCAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytcB | ||||
| Ortholog function: Cytochrome c4 | ||||
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella amazonensis SB2B | Sama_0091 | -95 | 3.7 | AAATATTGCCCCGATCACATAT |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
|
Position: -134
Score: 4.7 Sequence: TTTCTTGATCCAGCTCAAATTT
Position: -74
Score: 4.1 Sequence: AATATTGATGTAGATCAATAAT
Locus tag: Patl_0030
|
||||
| Patl_0030 | -134 | 4.7 | TTTCTTGATCCAGCTCAAATTT | |
| -74 | 4.1 | AATATTGATGTAGATCAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -161 | 4.4 | TAGCGTGATTTGGATCTCAATG |
| -110 | 4.4 | AATTTTGATTTGGATCAATAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| -158 | 4 | TTTCGTGATTAGGATCTCAAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2775 | -107 | 3.8 | AATCTTGATTTGGATCAATAAG |
| Shewanella baltica OS155 | Sbal_1490 | -158 | 4 | TTTCGTGATTCAGCTCCCATGT |
| Shewanella denitrificans OS217 | Sden_2589 | -157 | 4.2 | TTTTGTGAATTAGATCAAGACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -232 | 3.9 | TCGCTTGATCAACCTCACAAAA |
| -170 | 3.9 | TTTTGTGATCCAAATCAACAGC | ||
| Shewanella amazonensis SB2B | Sama_1371 | -56 | 4 | AATTGTTACGGACGTAACAGAA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -159 | 4.4 | TATTGTGATCTAGATCCTTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -161 | 5.1 | AAATGTGATCTTCATCGCCTTT |
| -111 | 4.8 | ATTTTTGATTCAGGTCAAATTT | ||
| Shewanella piezotolerans WP3 | swp_3395 | -214 | 4 | TTGCGTGTTGTATGTCACCAAA |
| -161 | 4.4 | AAATGTGATCGCGATCACTGCT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -158 | 4.5 | TTTTGTGAGCTTGGTCATGTAT |
| -108 | 3.7 | TTAATTGATCTGGATCAATAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -211 | 4.3 | AATTATGACGTCGCTCACTAAA |
| -158 | 4.5 | AAGTGTGAGTTCGATCAAGTAT | ||
| -108 | 3.9 | TTTATTGATTTGGATCAATAAA | ||
|
Position: 17
Score: 3.7 Sequence: TTATTTGATCCCCAGCGCACCA
Locus tag: Patl_0605
|
||||
| Patl_0605 | 17 | 3.7 | TTATTTGATCCCCAGCGCACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0023 | ||||
| Ortholog function: FIG000605: protein co-occurring with transport systems (COG1739) | ||||
| Shewanella oneidensis MR-1 | SO0023 | -237 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0015 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp W3-18-1 | Sputw3181_0015 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp ANA-3 | Shewana3_0026 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-4 | Shewmr4_0020 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-7 | Shewmr7_0018 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella baltica OS155 | Sbal_0023 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella amazonensis SB2B | Sama_0034 | -109 | 4 | CTTTGTGATACACTGCACAGCA |
| Shewanella pealeana ATCC 700345 | Spea_0020 | -252 | 4.1 | CAGTGTGCGACGAATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0018 | -250 | 4 | CAGTGTGCGACTAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0025 | -48 | 3.8 | TTTTCTGATAGATTTTACATCA |
|
Position: -76
Score: 4.1 Sequence: TTTGGTAATCTTGATAACACTT
Locus tag: Patl_0948
|
||||
| Patl_0948 | -76 | 4.1 | TTTGGTAATCTTGATAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mmsA | ||||
| Ortholog function: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | ||||
| Shewanella amazonensis SB2B | Sama_1376 | -67 | 4.1 | AACCGCGACCGCCATCACATTT |
| Shewanella loihica PV-4 | Shew_1668 | -75 | 4.2 | TTATTTGAACATGATCACGCTT |
| Shewanella pealeana ATCC 700345 | Spea_2782 | -138 | 4.5 | AATATTGAGCAAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2877 | -138 | 4.2 | AATGTTGAGCAAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3386 | -175 | 4.4 | AATGTTGAGCGAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1474 | -92 | 4.3 | TTAATTGAGCAAGATCACACTT |
|
Position: -70
Score: 4.2 Sequence: AAATTTGATCTATTTTAGAAAT
Locus tag: Patl_1688
|
||||
| Patl_1688 | -70 | 4.2 | AAATTTGATCTATTTTAGAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE | ||||
| Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella loihica PV-4 | Shew_3003 | -49 | 4.9 | TTTTGTGACGTAATGCACACTA |
| Shewanella pealeana ATCC 700345 | Spea_1234 | -68 | 3.9 | AAATTTGATCTATGCCTCGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1266 | -67 | 4.4 | AAGTTTGATCTACAGCTCATTT |
| Shewanella piezotolerans WP3 | swp_3422 | -67 | 4.4 | AAATTTGATCTGCCGCTCAATT |
|
Position: -67
Score: 3.7 Sequence: ATTGGTAAGGTGCAACACATTA
Locus tag: Patl_1795
|
||||
| Patl_1795 | -67 | 3.7 | ATTGGTAAGGTGCAACACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2273 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1735 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2519 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2187 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2347 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1423 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1784 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2493 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2955 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2818 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1833 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: 24
Score: 3.8 Sequence: AAGCGTGACGGCGTTCAGGATT
Locus tag: Patl_1796
|
||||
| Patl_1796 | 24 | 3.8 | AAGCGTGACGGCGTTCAGGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1927.1 | ||||
| Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2272 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1736 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2518 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2186 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2346 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1424 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1785 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2492 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2953 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2817 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1834 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -34
Score: 3.8 Sequence: AATTGTGAGTCTTAATAAAATT
Locus tag: Patl_1799
|
||||
| Patl_1799 | -34 | 3.8 | AATTGTGAGTCTTAATAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sucA | ||||
| Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2269 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1739 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2515 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2183 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2343 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1427 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1788 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2489 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2949 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2814 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1837 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -224
Score: 4.3 Sequence: TAACTTGATTTGTATCAAGTTT
Locus tag: Patl_2073
|
||||
| Patl_2073 | -224 | 4.3 | TAACTTGATTTGTATCAAGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: -300
Score: 3.8 Sequence: CAGGGTGATGAGTGTCACATAC
Locus tag: Patl_2160
|
||||
| Patl_2160 | -300 | 3.8 | CAGGGTGATGAGTGTCACATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella oneidensis MR-1 | SO4452 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0274 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0273 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3748 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0284 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0101 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0082 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3524 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0087 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4120 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0122 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5009 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -173
Score: 4 Sequence: TTACATGACCACTTTCAAATAT
Locus tag: Patl_2282
|
||||
| Patl_2282 | -173 | 4 | TTACATGACCACTTTCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pckA | ||||
| Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Shewanella oneidensis MR-1 | SO0162 | -150 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3571 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_3708 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp ANA-3 | Shewana3_0147 | -151 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-4 | Shewmr4_0152 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-7 | Shewmr7_0147 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella amazonensis SB2B | Sama_0165 | -145 | 4.1 | TTTTCAGATCCGGCTCACACAT |
| Shewanella loihica PV-4 | Shew_3623 | -128 | 4.6 | TTTCGCGATCTTCCTCACACAT |
| Shewanella pealeana ATCC 700345 | Spea_0140 | -112 | 4.9 | TTTTTTGATCTAGTACACATAT |
| Shewanella halifaxensis HAW-EB4 | Shal_4178 | -112 | 4.8 | TTTTTTGATCTTGCCCACATAT |
| Shewanella piezotolerans WP3 | swp_0182 | -113 | 4.9 | TTTTTTGATCTAGTCCACATAT |
| Shewanella sediminis HAW-EB3 | Ssed_4362 | -142 | 4.1 | AAACACGATCTTCCTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_4740 | -100 | 3.8 | AATCGTGACATAGCGCAAAGAC |
|
Position: 4
Score: 3.4 Sequence: AAACGTTATTATGGACACTTAT
Locus tag: Patl_2492
|
||||
| Patl_2492 | 4 | 3.4 | AAACGTTATTATGGACACTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella oneidensis MR-1 | SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella baltica OS155 | Sbal_2306 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -66 | 3.8 | ACTTGTGAATAGGATCATCATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -67 | 3.8 | TCTTGTGAATGAGATCAATAAT |
| Shewanella amazonensis SB2B | Sama_1870 | -64 | 4.3 | ACTTGTGATCAGGATCGCTTAT |
| Shewanella loihica PV-4 | Shew_2108 | -71 | 4.9 | AATTGTGATTATGGTCATATAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -70 | 4.5 | AATTGTGAGATAGAACTCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA |
| Shewanella piezotolerans WP3 | swp_2312 | -97 | 3.5 | AATTGTGACGTAGACCCGCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -71 | 4.5 | AATTGTGATTATGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -73 | 4.8 | AATTGTGATATCGATCAATATA |
|
Position: -168
Score: 3.4 Sequence: TCTTTTGACTATTATCAAATCT
Locus tag: Patl_2782
|
||||
| Patl_2782 | -168 | 3.4 | TCTTTTGACTATTATCAAATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO2753 | -235 | 4.7 | TTAAGTGATCTGCCTCACTTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp W3-18-1 | Sputw3181_2420 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp ANA-3 | Shewana3_2536 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-4 | Shewmr4_2373 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-7 | Shewmr7_2445 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella baltica OS155 | Sbal_1741 | -233 | 4.7 | AAAGGTGATCTATATCACTTAA |
| Shewanella amazonensis SB2B | Sama_2091 | -226 | 4.7 | TTGTGTGATCTTGCGCACGTTA |
| Shewanella loihica PV-4 | Shew_1522 | -276 | 3.5 | ATTTGCGCTTGATTACGCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2569 | -251 | 3.9 | TAGTGTGGGTTTAGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -266 | 3.6 | TATTGCGGGGTTTGTCACGTTT |
| Shewanella piezotolerans WP3 | swp_1825 | -248 | 3.6 | TTGTGAGTCCTTAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1852 | -257 | 3.8 | AAGTGTGATCTTGGTCGGTAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2736 | -259 | 3.7 | TAGTGTGATCTAGGTTGGGTAA |
|
Position: -7
Score: 4.6 Sequence: AATTGCGATGCGGATCAAAGAT
Locus tag: Patl_3533
|
||||
| Patl_3533 | -7 | 4.6 | AATTGCGATGCGGATCAAAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpK | ||||
| Ortholog function: glycerol kinase (EC 2.7.1.30) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0476 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_0379 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_3756 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-4 | Shewmr4_3583 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-7 | Shewmr7_0373 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella baltica OS155 | Sbal_0391 | -207 | 4.3 | AATGGTGATATTGGTCACTAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3815 | -169 | 4.9 | AAGTTTGATCATGATCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0444 | -114 | 3.8 | TTTTGTGCTGTTTTTTATAAAG |
|
Position: -35
Score: 3.6 Sequence: AAGTGTGAGCAAATTCAACCCT
Locus tag: Patl_3701
|
||||
| Patl_3701 | -35 | 3.6 | AAGTGTGAGCAAATTCAACCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: petA | ||||
| Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | ||||
| Shewanella oneidensis MR-1 | SO0608 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3276 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0665 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0601 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0602 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3428 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0562 | -131 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -102 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3307 | -129 | 3.8 | CACTATGATCTGGTTCTAATTT |
| Shewanella loihica PV-4 | Shew_0570 | -130 | 4.1 | TACTATGATCTGCTTCTAATTT |
| -101 | 3.9 | TAATGAGCCCCGCCTCAAATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3536 | -78 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3630 | -128 | 4.6 | AACTATGATCTGGCTCAAATTT |
| Shewanella piezotolerans WP3 | swp_0793 | -131 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0801 | -132 | 4.4 | TACTATGATCAAGCTCAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4166 | -129 | 3.8 | TACTATGATCTGCTTCTGATTT |
|
Position: -34
Score: 3.7 Sequence: AATCTCGATATGTTTCAAATAC
Position: -4
Score: 3.8 Sequence: TTTTATGATTTCTATTTCAGAT
Locus tag: Patl_4233
|
||||
| Patl_4233 | -34 | 3.7 | AATCTCGATATGTTTCAAATAC | |
| -4 | 3.8 | TTTTATGATTTCTATTTCAGAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhgI | ||||
| Ortholog function: NfuA Fe-S protein maturation | ||||
| Shewanella oneidensis MR-1 | SO4619 | -129 | 3.9 | AATCGTGATCACTATGGCAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3794 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0119 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp ANA-3 | Shewana3_4003 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-4 | Shewmr4_3804 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-7 | Shewmr7_3880 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella baltica OS155 | Sbal_0142 | -129 | 4 | AATCGTGATCGCTATGGCAAAA |
| Shewanella piezotolerans WP3 | swp_4841 | -131 | 3.8 | AAATGTGATCAGAACTGCGTTA |