Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) No orthologous TFs found
Regulated genes 54
Built upon 2713 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: 21
Score: 3.7
Sequence: TATTCTGATAATGGTCAATTAA
Locus tag: Patl_0013
Patl_0013 21 3.7 TATTCTGATAATGGTCAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -134
Score: 4.7
Sequence: TTTCTTGATCCAGCTCAAATTT
Position: -74
Score: 4.1
Sequence: AATATTGATGTAGATCAATAAT
Locus tag: Patl_0030
Patl_0030 -134 4.7 TTTCTTGATCCAGCTCAAATTT
-74 4.1 AATATTGATGTAGATCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -161 4.4 TAGCGTGATTTGGATCTCAATG
-110 4.4 AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_1392 -211 4.2 ATAAATGCTGCGTATCACATAA
-158 4 TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1 Sputw3181_2709 -211 4.2 ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3 Shewana3_2775 -107 3.8 AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155 Sbal_1490 -158 4 TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217 Sden_2589 -157 4.2 TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400 Sfri_1334 -232 3.9 TCGCTTGATCAACCTCACAAAA
-170 3.9 TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345 Spea_2787 -159 4.4 TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4 Shal_2887 -161 5.1 AAATGTGATCTTCATCGCCTTT
-111 4.8 ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3 swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3 Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908 Swoo_3207 -211 4.3 AATTATGACGTCGCTCACTAAA
-158 4.5 AAGTGTGAGTTCGATCAAGTAT
-108 3.9 TTTATTGATTTGGATCAATAAA
Position: 17
Score: 3.7
Sequence: TTATTTGATCCCCAGCGCACCA
Locus tag: Patl_0605
Patl_0605 17 3.7 TTATTTGATCCCCAGCGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0023
Ortholog function: FIG000605: protein co-occurring with transport systems (COG1739)
Shewanella oneidensis MR-1 SO0023 -237 4.4 CTTTGTGATACACTGCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0015 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp W3-18-1 Sputw3181_0015 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp ANA-3 Shewana3_0026 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-4 Shewmr4_0020 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-7 Shewmr7_0018 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella baltica OS155 Sbal_0023 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella amazonensis SB2B Sama_0034 -109 4 CTTTGTGATACACTGCACAGCA
Shewanella pealeana ATCC 700345 Spea_0020 -252 4.1 CAGTGTGCGACGAATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0018 -250 4 CAGTGTGCGACTAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0025 -48 3.8 TTTTCTGATAGATTTTACATCA
Position: -76
Score: 4.1
Sequence: TTTGGTAATCTTGATAACACTT
Locus tag: Patl_0948
Patl_0948 -76 4.1 TTTGGTAATCTTGATAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmsA
Ortholog function: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Shewanella amazonensis SB2B Sama_1376 -67 4.1 AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4 Shew_1668 -75 4.2 TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345 Spea_2782 -138 4.5 AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_2877 -138 4.2 AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3 swp_3386 -175 4.4 AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1474 -92 4.3 TTAATTGAGCAAGATCACACTT
Position: -70
Score: 4.2
Sequence: AAATTTGATCTATTTTAGAAAT
Locus tag: Patl_1688
Patl_1688 -70 4.2 AAATTTGATCTATTTTAGAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE
Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella loihica PV-4 Shew_3003 -49 4.9 TTTTGTGACGTAATGCACACTA
Shewanella pealeana ATCC 700345 Spea_1234 -68 3.9 AAATTTGATCTATGCCTCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1266 -67 4.4 AAGTTTGATCTACAGCTCATTT
Shewanella piezotolerans WP3 swp_3422 -67 4.4 AAATTTGATCTGCCGCTCAATT
Position: -67
Score: 3.7
Sequence: ATTGGTAAGGTGCAACACATTA
Locus tag: Patl_1795
Patl_1795 -67 3.7 ATTGGTAAGGTGCAACACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: 24
Score: 3.8
Sequence: AAGCGTGACGGCGTTCAGGATT
Locus tag: Patl_1796
Patl_1796 24 3.8 AAGCGTGACGGCGTTCAGGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1927.1
Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein
Shewanella putrefaciens CN-32 Sputcn32_2272 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1736 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2518 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2186 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2346 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1424 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1785 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2492 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2953 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2817 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1834 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -34
Score: 3.8
Sequence: AATTGTGAGTCTTAATAAAATT
Locus tag: Patl_1799
Patl_1799 -34 3.8 AATTGTGAGTCTTAATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Shewanella putrefaciens CN-32 Sputcn32_2269 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1739 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2515 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2183 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2343 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1427 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1788 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2489 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2949 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2814 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1837 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -224
Score: 4.3
Sequence: TAACTTGATTTGTATCAAGTTT
Locus tag: Patl_2073
Patl_2073 -224 4.3 TAACTTGATTTGTATCAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -300
Score: 3.8
Sequence: CAGGGTGATGAGTGTCACATAC
Locus tag: Patl_2160
Patl_2160 -300 3.8 CAGGGTGATGAGTGTCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0389 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0243 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0274 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0273 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3748 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0284 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0101 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0082 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3524 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0087 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4120 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0122 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5009 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4402 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4793 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -173
Score: 4
Sequence: TTACATGACCACTTTCAAATAT
Locus tag: Patl_2282
Patl_2282 -173 4 TTACATGACCACTTTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: 4
Score: 3.4
Sequence: AAACGTTATTATGGACACTTAT
Locus tag: Patl_2492
Patl_2492 4 3.4 AAACGTTATTATGGACACTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -168
Score: 3.4
Sequence: TCTTTTGACTATTATCAAATCT
Locus tag: Patl_2782
Patl_2782 -168 3.4 TCTTTTGACTATTATCAAATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO2753 -235 4.7 TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32 Sputcn32_1602 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1 Sputw3181_2420 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3 Shewana3_2536 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4 Shewmr4_2373 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7 Shewmr7_2445 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155 Sbal_1741 -233 4.7 AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B Sama_2091 -226 4.7 TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4 Shew_1522 -276 3.5 ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345 Spea_2569 -251 3.9 TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1686 -266 3.6 TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3 swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908 Swoo_2736 -259 3.7 TAGTGTGATCTAGGTTGGGTAA
Position: -7
Score: 4.6
Sequence: AATTGCGATGCGGATCAAAGAT
Locus tag: Patl_3533
Patl_3533 -7 4.6 AATTGCGATGCGGATCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: glycerol kinase (EC 2.7.1.30)
Shewanella putrefaciens CN-32 Sputcn32_0476 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp W3-18-1 Sputw3181_0379 -195 4.6 AAAAGTGATTTTTATCACTAAA
Shewanella sp ANA-3 Shewana3_3756 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-4 Shewmr4_3583 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella sp MR-7 Shewmr7_0373 -201 4.6 AAAAGTGATTTATCTCACTAAA
Shewanella baltica OS155 Sbal_0391 -207 4.3 AATGGTGATATTGGTCACTAAA
Shewanella frigidimarina NCIMB 400 Sfri_3815 -169 4.9 AAGTTTGATCATGATCACAATT
Shewanella halifaxensis HAW-EB4 Shal_0444 -114 3.8 TTTTGTGCTGTTTTTTATAAAG
Position: -35
Score: 3.6
Sequence: AAGTGTGAGCAAATTCAACCCT
Locus tag: Patl_3701
Patl_3701 -35 3.6 AAGTGTGAGCAAATTCAACCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -34
Score: 3.7
Sequence: AATCTCGATATGTTTCAAATAC
Position: -4
Score: 3.8
Sequence: TTTTATGATTTCTATTTCAGAT
Locus tag: Patl_4233
Patl_4233 -34 3.7 AATCTCGATATGTTTCAAATAC
-4 3.8 TTTTATGATTTCTATTTCAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhgI
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1 SO4619 -129 3.9 AATCGTGATCACTATGGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_3794 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp W3-18-1 Sputw3181_0119 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp ANA-3 Shewana3_4003 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-4 Shewmr4_3804 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-7 Shewmr7_3880 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella baltica OS155 Sbal_0142 -129 4 AATCGTGATCGCTATGGCAAAA
Shewanella piezotolerans WP3 swp_4841 -131 3.8 AAATGTGATCAGAACTGCGTTA
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