Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) Patl_2152
Regulated genes 8
Built upon 505 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: -97
Score: 5.2
Sequence: GAATGCAAATAGTTATCATAT
Locus tag: Patl_0311
Patl_0311 -97 5.2 GAATGCAAATAGTTATCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -72
Score: 6.1
Sequence: AATTGAAAATCATTCTCATTA
Locus tag: Patl_1142
Patl_1142 -72 6.1 AATTGAAAATCATTCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1590
Ortholog function: TonB-dependent siderophore receptor
Shewanella putrefaciens CN-32 Sputcn32_1590 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp W3-18-1 Sputw3181_2432 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp ANA-3 Shewana3_2551 -99 6 AAATGAGAATTATTGTCATCT
Shewanella sp MR-4 Shewmr4_2386 -98 6.2 AAATGAGAATTATTGTCATTT
Shewanella sp MR-7 Shewmr7_2458 -98 5.5 AAATGAGAATTATTGTCACCT
Shewanella frigidimarina NCIMB 400 Sfri_0391 -75 5.7 AAATGAGAATAGTTTCCATTA
Position: -46
Score: 5.4
Sequence: AAACAACAATTATTATCATTT
Locus tag: Patl_1397
Patl_1397 -46 5.4 AAACAACAATTATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Shewanella oneidensis MR-1 SO0583 -55 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3295 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp W3-18-1 Sputw3181_0646 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp ANA-3 Shewana3_0581 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-4 Shewmr4_0582 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-7 Shewmr7_3448 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella baltica OS155 Sbal_0542 -53 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella denitrificans OS217 Sden_3217 -99 5.7 CAATGATAACCGTTTTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3324 -76 5.7 CAATGATAACCGTTTTCATTT
Shewanella amazonensis SB2B Sama_3040 -59 5.5 TGATGAGAACGGTTTTTATTT
Shewanella pealeana ATCC 700345 Spea_3555 -58 5.8 CATTGAGAATCATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3649 -58 5.5 CACTGAGAATCATTTTCATTT
Shewanella piezotolerans WP3 swp_0771 -86 5.3 GATTGATAACTATTCTCATCA
-57 5.6 CATTGAGAATCGTTTTCATTT
Position: -147
Score: 4.5
Sequence: AATCATCAATTATTCTCATTT
Locus tag: Patl_2076
Patl_2076 -147 4.5 AATCATCAATTATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -27
Score: 6
Sequence: AAATGATAATAATTAGCATTA
Locus tag: Patl_2402
Patl_2402 -27 6 AAATGATAATAATTAGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -105
Score: 5.4
Sequence: TATTGATAATAGTTTGCATTA
Locus tag: Patl_3109
Patl_3109 -105 5.4 TATTGATAATAGTTTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -59
Score: 5.3
Sequence: AAATGATATTAATTACCATTC
Locus tag: Patl_3803
Patl_3803 -59 5.3 AAATGATATTAATTACCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
© 2009-2020 RegPrecise