Propagation of Fur regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | Patl_2152 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -97
Score: 5.2 Sequence: GAATGCAAATAGTTATCATAT
Locus tag: Patl_0311
|
||||
| Patl_0311 | -97 | 5.2 | GAATGCAAATAGTTATCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3064 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
|
Position: -72
Score: 6.1 Sequence: AATTGAAAATCATTCTCATTA
Locus tag: Patl_1142
|
||||
| Patl_1142 | -72 | 6.1 | AATTGAAAATCATTCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1590 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1590 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp W3-18-1 | Sputw3181_2432 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp ANA-3 | Shewana3_2551 | -99 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp MR-4 | Shewmr4_2386 | -98 | 6.2 | AAATGAGAATTATTGTCATTT |
| Shewanella sp MR-7 | Shewmr7_2458 | -98 | 5.5 | AAATGAGAATTATTGTCACCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0391 | -75 | 5.7 | AAATGAGAATAGTTTCCATTA |
|
Position: -46
Score: 5.4 Sequence: AAACAACAATTATTATCATTT
Locus tag: Patl_1397
|
||||
| Patl_1397 | -46 | 5.4 | AAACAACAATTATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Shewanella oneidensis MR-1 | SO0583 | -55 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3295 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0646 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_0581 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_0582 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella baltica OS155 | Sbal_0542 | -53 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella denitrificans OS217 | Sden_3217 | -99 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT |
| Shewanella pealeana ATCC 700345 | Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3649 | -58 | 5.5 | CACTGAGAATCATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_0771 | -86 | 5.3 | GATTGATAACTATTCTCATCA |
| -57 | 5.6 | CATTGAGAATCGTTTTCATTT | ||
|
Position: -147
Score: 4.5 Sequence: AATCATCAATTATTCTCATTT
Locus tag: Patl_2076
|
||||
| Patl_2076 | -147 | 4.5 | AATCATCAATTATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin subunit 2 | ||||
| Shewanella oneidensis MR-1 | SO1111 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0944 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0932 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0990 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2873 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1175 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -27
Score: 6 Sequence: AAATGATAATAATTAGCATTA
Locus tag: Patl_2402
|
||||
| Patl_2402 | -27 | 6 | AAATGATAATAATTAGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -105
Score: 5.4 Sequence: TATTGATAATAGTTTGCATTA
Locus tag: Patl_3109
|
||||
| Patl_3109 | -105 | 5.4 | TATTGATAATAGTTTGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -59
Score: 5.3 Sequence: AAATGATATTAATTACCATTC
Locus tag: Patl_3803
|
||||
| Patl_3803 | -59 | 5.3 | AAATGATATTAATTACCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |