Propagation of TreR regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | TreR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Trehalose utilization |
| Effector: | Trehalose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | Patl_1823 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -88
Score: 6.4 Sequence: AAATGCAAACGATTGCAAAA
Position: -64
Score: 6.5 Sequence: AATTGCAATCGTTTGCATTT
Locus tag: Patl_1822
|
||||
| Patl_1822 | -88 | 6.4 | AAATGCAAACGATTGCAAAA | |
| -64 | 6.5 | AATTGCAATCGTTTGCATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Tre) | ||||
| Ortholog function: Trehalose-regulated TonB-dependent outer membrane receptor | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3503 | -133 | 6.5 | AAATGCAAACGTTTGCATAA |
| -110 | 6.4 | TATTGCAAACGTTTGCATTG | ||
| Shewanella woodyi ATCC 51908 | Swoo_1434 | -160 | 6.4 | AAATGCAAACGATTGCAAAA |
| -137 | 6 | AATTGCAATCGTTTGCAAGC | ||
|
Position: -73
Score: 6.3 Sequence: GAATGCAAACGATTGCATTT
Locus tag: Patl_1824
|
||||
| Patl_1824 | -73 | 6.3 | GAATGCAAACGATTGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treT | ||||
| Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3505 | -72 | 6.5 | AAATGCAAACGATTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_1438 | -175 | 6.4 | TTTTGCAAACGATTGCAAAA |