Propagation of TreR regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog:	TreR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Trehalose utilization
Effector:	Trehalose
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Pseudoalteromonas atlantica T6c
Orthologous TF(s)	Patl_1823
Regulated genes	2

Built upon 11 sites [see more]

Predicted regulatory interactions in *Pseudoalteromonas atlantica T6c*
	Locus tag	Position	Score	Sequence
Position: -88 Score: 6.4 Sequence: AAATGCAAACGATTGCAAAA Position: -64 Score: 6.5 Sequence: AATTGCAATCGTTTGCATTT Locus tag: Patl_1822
	Patl_1822	-88	6.4	AAATGCAAACGATTGCAAAA
		-64	6.5	AATTGCAATCGTTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Tre)
Ortholog function: Trehalose-regulated TonB-dependent outer membrane receptor
Shewanella frigidimarina NCIMB 400	Sfri_3503	-133	6.5	AAATGCAAACGTTTGCATAA
		-110	6.4	TATTGCAAACGTTTGCATTG
Shewanella woodyi ATCC 51908	Swoo_1434	-160	6.4	AAATGCAAACGATTGCAAAA
		-137	6	AATTGCAATCGTTTGCAAGC

Position: -73 Score: 6.3 Sequence: GAATGCAAACGATTGCATTT Locus tag: Patl_1824
	Patl_1824	-73	6.3	GAATGCAAACGATTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily
Shewanella frigidimarina NCIMB 400	Sfri_3505	-72	6.5	AAATGCAAACGATTGCATTA
Shewanella woodyi ATCC 51908	Swoo_1438	-175	6.4	TTTTGCAAACGATTGCAAAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --