Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LiuR regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) Patl_2924
Regulated genes 3
Built upon 134 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: -211
Score: 6.4
Sequence: CTTTACGTTTACGTAAAG
Position: -188
Score: 5.5
Sequence: CTTAACGTAAAGGTAAAG
Locus tag: Patl_2923
Patl_2923 -211 6.4 CTTTACGTTTACGTAAAG
-188 5.5 CTTAACGTAAAGGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase
Shewanella oneidensis MR-1 SO_1677 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1397 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp W3-18-1 Sputw3181_2704 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp ANA-3 Shewana3_2771 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-4 Shewmr4_2597 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-7 Shewmr7_2664 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella baltica OS155 Sbal_1495 -100 5.9 CTTTACGTTCGCGTAAAC
Shewanella denitrificans OS217 Sden_1943 -97 6.2 CTTTACGTTAGCGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_1338 -78 5.6 CTTTACGTTCGCGTCAAC
Shewanella amazonensis SB2B Sama_1375 -110 5.9 CTTTACGTTCGCGTAAAC
Shewanella loihica PV-4 Shew_1667 -105 5.9 CTTTACGTTCGCGTAAAC
Shewanella pealeana ATCC 700345 Spea_2783 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2878 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella piezotolerans WP3 swp_3387 -206 5.9 CTTTACGTTCGCGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1473 -122 5.9 CTTTACGTTCGCGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3202 -110 5.9 CTTTACGTTCGCGTAAAC
Position: -86
Score: 6.4
Sequence: CTTTACGTAAACGTAAAG
Locus tag: Patl_2924
Patl_2924 -86 6.4 CTTTACGTAAACGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: branched chain amino acid metabolism regulator, MerR family
Shewanella oneidensis MR-1 SO_1898 -59 6 CTTTACCTTTACGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1720 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp W3-18-1 Sputw3181_2305 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp ANA-3 Shewana3_1673 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-4 Shewmr4_2321 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-7 Shewmr7_2393 -59 6 CTTTACCTTTACGTAAAC
Shewanella baltica OS155 Sbal_2827 -59 6 CTTTACCTTTACGTAAAC
Shewanella denitrificans OS217 Sden_2244 -58 6 CTTTACCTTTACGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -59 6 CTTTACCTTTACGTAAAC
Shewanella amazonensis SB2B Sama_1363 -65 6 CTTTACCTTTACGTAAAC
Shewanella loihica PV-4 Shew_2569 -63 6 CTTTACCTTTACGTAAAC
Shewanella pealeana ATCC 700345 Spea_2796 -63 6 CTTTACCTTTACGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2901 -62 6 CTTTACCTTTACGTAAAC
Shewanella piezotolerans WP3 swp_3441 -28 6 CTTTACCTTTACGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1459 -60 6 CTTTACCTTTACGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3222 -61 6 CTTTACCTTTACGTAAAC