Propagation of LiuR regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | LiuR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | Patl_2924 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -211
Score: 6.4 Sequence: CTTTACGTTTACGTAAAG
Position: -188
Score: 5.5 Sequence: CTTAACGTAAAGGTAAAG
Locus tag: Patl_2923
|
||||
| Patl_2923 | -211 | 6.4 | CTTTACGTTTACGTAAAG | |
| -188 | 5.5 | CTTAACGTAAAGGTAAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp ANA-3 | Shewana3_2771 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp MR-4 | Shewmr4_2597 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sp MR-7 | Shewmr7_2664 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella baltica OS155 | Sbal_1495 | -100 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella denitrificans OS217 | Sden_1943 | -97 | 6.2 | CTTTACGTTAGCGTAAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -78 | 5.6 | CTTTACGTTCGCGTCAAC |
| Shewanella amazonensis SB2B | Sama_1375 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella loihica PV-4 | Shew_1667 | -105 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella piezotolerans WP3 | swp_3387 | -206 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -122 | 5.9 | CTTTACGTTCGCGTAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
|
Position: -86
Score: 6.4 Sequence: CTTTACGTAAACGTAAAG
Locus tag: Patl_2924
|
||||
| Patl_2924 | -86 | 6.4 | CTTTACGTAAACGTAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: branched chain amino acid metabolism regulator, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp MR-4 | Shewmr4_2321 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sp MR-7 | Shewmr7_2393 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella baltica OS155 | Sbal_2827 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella denitrificans OS217 | Sden_2244 | -58 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -59 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella amazonensis SB2B | Sama_1363 | -65 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella loihica PV-4 | Shew_2569 | -63 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -63 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -62 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella piezotolerans WP3 | swp_3441 | -28 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella sediminis HAW-EB3 | Ssed_1459 | -60 | 6 | CTTTACCTTTACGTAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -61 | 6 | CTTTACCTTTACGTAAAC |