Propagation of LexA regulog to Psychromonas ingrahamii 37
| Source regulog: | LexA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Psychromonas ingrahamii 37 |
| Orthologous TF(s) | Ping_0108 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -43
Score: 4.9 Sequence: CACTGTTCATGTTTACAGTT
Locus tag: Ping_0108
|
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| Ping_0108 | -43 | 4.9 | CACTGTTCATGTTTACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
| Shewanella oneidensis MR-1 | SO_4603 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3780 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp W3-18-1 | Sputw3181_0135 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp ANA-3 | Shewana3_3989 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp MR-4 | Shewmr4_3789 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp MR-7 | Shewmr7_3862 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella baltica OS155 | Sbal_0156 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella denitrificans OS217 | Sden_3515 | -45 | 5.1 | TACTGTATATAATGACAGTC |
| -26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0260 | -45 | 5 | CACTGTATATAATGACAGTC |
| -26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
| Shewanella amazonensis SB2B | Sama_3481 | -45 | 5.6 | TACTGTATATACTGACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella loihica PV-4 | Shew_0127 | -45 | 4.9 | TACTGTATATACTGACAGGT |
| -26 | 4.8 | TACTGTATGGAAAGACAGGA | ||
| Shewanella pealeana ATCC 700345 | Spea_3997 | -45 | 5.2 | TACTGTATATACTAACAGGT |
| -26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0260 | -45 | 4.9 | TACTGTATATACTGACAGGT |
| -26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
| Shewanella piezotolerans WP3 | swp_4821 | -45 | 5.2 | TACTGTATATACTAACAGGT |
| -26 | 5 | TACTGTATAGAAAAACAGGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0200 | -45 | 5.6 | TACTGTATATACTAACAGTT |
| -26 | 5 | TACTGTATAGAAAGACAGGA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0180 | -45 | 5.3 | TACTGTATATACTGACAGTT |
| -26 | 5 | TACTGTATAGAAAGACAGGA | ||
|
Position: -71
Score: 5.9 Sequence: TACTGTTTAAAAAAACAGTA
Locus tag: Ping_0914
|
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| Ping_0914 | -71 | 5.9 | TACTGTTTAAAAAAACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recN | ||||
| Ortholog function: DNA repair protein RecN | ||||
| Shewanella oneidensis MR-1 | SO_3462 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2771 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella sp W3-18-1 | Sputw3181_1241 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella sp ANA-3 | Shewana3_1104 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella sp MR-4 | Shewmr4_1104 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella sp MR-7 | Shewmr7_1170 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella baltica OS155 | Sbal_3153 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella denitrificans OS217 | Sden_1151 | -71 | 5.4 | TACTGTATAAAAAACCAGTG |
| -49 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
| -50 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella amazonensis SB2B | Sama_1026 | -73 | 5.4 | TACTGTACAAAAAATCAGTA |
| -51 | 5.3 | TACTGTGTATCAATACAGTA | ||
| Shewanella loihica PV-4 | Shew_1196 | -62 | 5.7 | TACTGTATAAAAATTCAGTA |
| -40 | 4.9 | TACTGTGCATGAATACAGTA | ||
| Shewanella pealeana ATCC 700345 | Spea_1169 | -62 | 5.9 | TACTGTATGAATAAACAGTA |
| -40 | 5.3 | TACTGTTTAACCATACAGTG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1212 | -62 | 5.8 | TACTGTATAGATAAACAGTA |
| -40 | 5.5 | TACTGTTTAACTATACAGTG | ||
| Shewanella piezotolerans WP3 | swp_1346 | -61 | 5.7 | TACTGTATAGAAAAACAGTA |
| -39 | 5.6 | TACTGTTTATCAATACAGTG | ||
| Shewanella sediminis HAW-EB3 | Ssed_1281 | -62 | 5.8 | TACTGTATATAAAATCAGTA |
| -40 | 5.5 | TACTGTTTAAAAACACAGTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3359 | -64 | 5.9 | TACTGTATTTATGAACAGTA |
| -42 | 5.9 | TACTGTTCATAAATACAGTA | ||
|
Position: -41
Score: 5.3 Sequence: TACTGTTGTTTTATACAGTG
Locus tag: Ping_2235
|
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| Ping_2235 | -41 | 5.3 | TACTGTTGTTTTATACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sulA | ||||
| Ortholog function: Cell division inhibitor sulA | ||||
| Shewanella woodyi ATCC 51908 | Swoo_0179 | -45 | 5.3 | TACTGTATATACTGACAGTT |
| -26 | 5 | TACTGTATAGAAAGACAGGA | ||
|
Position: -34
Score: 5.2 Sequence: TACTGTGTAAAAAAACAGTT
Locus tag: Ping_2461
|
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| Ping_2461 | -34 | 5.2 | TACTGTGTAAAAAAACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: topB | ||||
| Ortholog function: DNA topoisomerase III (EC 5.99.1.2) | ||||
| Shewanella oneidensis MR-1 | SO_3061 | -32 | 5.7 | TACTGTAATTATATCCAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2435 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
| Shewanella sp W3-18-1 | Sputw3181_1573 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
| Shewanella sp ANA-3 | Shewana3_1486 | -32 | 5.4 | CACTGTAATTATATCCAGTG |
| Shewanella sp MR-4 | Shewmr4_1433 | -32 | 5.6 | CACTGTAATTATATCCAGTA |
| Shewanella sp MR-7 | Shewmr7_1498 | 30 | 5.6 | CACTGTAATTATATCCAGTA |
| Shewanella baltica OS155 | Sbal_2736 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
| Shewanella denitrificans OS217 | Sden_2400 | -41 | 5.6 | CACTGTAATTACATACAGTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1401 | -67 | 5.8 | TACTGTAAATTTATACAGTT |
| Shewanella amazonensis SB2B | Sama_2145 | 29 | 5.3 | TACTGTAAATTCATCCAGTG |
| Shewanella loihica PV-4 | Shew_2299 | -32 | 5.9 | TACTGTTAATTTATACAGTA |
| Shewanella pealeana ATCC 700345 | Spea_1625 | -36 | 5.9 | TACTGTTAATTTATACAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2636 | -36 | 5.9 | TACTGTTAATTTATACAGTA |
| Shewanella piezotolerans WP3 | swp_3111 | -36 | 5.8 | TACTGTTAATTTATACAGTG |
| Shewanella sediminis HAW-EB3 | Ssed_1658 | -38 | 5.4 | TACTGGTAATTTATACAGTG |
| Shewanella woodyi ATCC 51908 | Swoo_2976 | -35 | 5.4 | TACTGGTAATTTATACAGTG |