Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Psychromonas ingrahamii 37

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Psychromonas ingrahamii 37
Orthologous TF(s) Ping_0108
Regulated genes 6
Built upon 192 sites [see more]
Predicted regulatory interactions in Psychromonas ingrahamii 37
Locus tag Position Score Sequence
Position: -43
Score: 4.9
Sequence: CACTGTTCATGTTTACAGTT
Locus tag: Ping_0108
Ping_0108 -43 4.9 CACTGTTCATGTTTACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -71
Score: 5.9
Sequence: TACTGTTTAAAAAAACAGTA
Locus tag: Ping_0914
Ping_0914 -71 5.9 TACTGTTTAAAAAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2771 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp W3-18-1 Sputw3181_1241 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp ANA-3 Shewana3_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-4 Shewmr4_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-7 Shewmr7_1170 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella baltica OS155 Sbal_3153 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella denitrificans OS217 Sden_1151 -71 5.4 TACTGTATAAAAAACCAGTG
-49 5.6 TACTGTTTATCAATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1043 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella amazonensis SB2B Sama_1026 -73 5.4 TACTGTACAAAAAATCAGTA
-51 5.3 TACTGTGTATCAATACAGTA
Shewanella loihica PV-4 Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
-40 4.9 TACTGTGCATGAATACAGTA
Shewanella pealeana ATCC 700345 Spea_1169 -62 5.9 TACTGTATGAATAAACAGTA
-40 5.3 TACTGTTTAACCATACAGTG
Shewanella halifaxensis HAW-EB4 Shal_1212 -62 5.8 TACTGTATAGATAAACAGTA
-40 5.5 TACTGTTTAACTATACAGTG
Shewanella piezotolerans WP3 swp_1346 -61 5.7 TACTGTATAGAAAAACAGTA
-39 5.6 TACTGTTTATCAATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1281 -62 5.8 TACTGTATATAAAATCAGTA
-40 5.5 TACTGTTTAAAAACACAGTA
Shewanella woodyi ATCC 51908 Swoo_3359 -64 5.9 TACTGTATTTATGAACAGTA
-42 5.9 TACTGTTCATAAATACAGTA
Position: -41
Score: 5.3
Sequence: TACTGTTGTTTTATACAGTG
Locus tag: Ping_2235
Ping_2235 -41 5.3 TACTGTTGTTTTATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sulA
Ortholog function: Cell division inhibitor sulA
Shewanella woodyi ATCC 51908 Swoo_0179 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -34
Score: 5.2
Sequence: TACTGTGTAAAAAAACAGTT
Locus tag: Ping_2461
Ping_2461 -34 5.2 TACTGTGTAAAAAAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: topB
Ortholog function: DNA topoisomerase III (EC 5.99.1.2)
Shewanella oneidensis MR-1 SO_3061 -32 5.7 TACTGTAATTATATCCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2435 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp W3-18-1 Sputw3181_1573 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp ANA-3 Shewana3_1486 -32 5.4 CACTGTAATTATATCCAGTG
Shewanella sp MR-4 Shewmr4_1433 -32 5.6 CACTGTAATTATATCCAGTA
Shewanella sp MR-7 Shewmr7_1498 30 5.6 CACTGTAATTATATCCAGTA
Shewanella baltica OS155 Sbal_2736 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella denitrificans OS217 Sden_2400 -41 5.6 CACTGTAATTACATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1401 -67 5.8 TACTGTAAATTTATACAGTT
Shewanella amazonensis SB2B Sama_2145 29 5.3 TACTGTAAATTCATCCAGTG
Shewanella loihica PV-4 Shew_2299 -32 5.9 TACTGTTAATTTATACAGTA
Shewanella pealeana ATCC 700345 Spea_1625 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella halifaxensis HAW-EB4 Shal_2636 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella piezotolerans WP3 swp_3111 -36 5.8 TACTGTTAATTTATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1658 -38 5.4 TACTGGTAATTTATACAGTG
Shewanella woodyi ATCC 51908 Swoo_2976 -35 5.4 TACTGGTAATTTATACAGTG
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