Propagation of CodY regulog to Bacillus sp. B14905
| Source regulog: | CodY - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus sp. B14905 |
| Orthologous TF(s) | BB14905_21123, BB14905_21128 |
| Regulated genes | 35 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -35
Score: 4.4 Sequence: AATATTTTTAAAAAT
Locus tag: BB14905_05788
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| BB14905_05788 | -35 | 4.4 | AATATTTTTAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpr | ||||
| Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU09990 | -90 | 4.4 | ATTTATTAAAAAATT |
| Bacillus licheniformis DSM 13 | BLi01078 | -93 | 4.7 | ATTTTTTAAAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2290 | -87 | 4.4 | ATTTATTAAAAAATT |
| Bacillus halodurans C-125 | BH1185 | -148 | 4.7 | ATTTTTTAAAAAATT |
|
Position: -96
Score: 4.9 Sequence: AATTATCTGAAAATA
Locus tag: BB14905_06213
|
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| BB14905_06213 | -96 | 4.9 | AATTATCTGAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: appD | ||||
| Ortholog function: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0356 | -48 | 4.7 | AATTTTTTGAATTTT |
| -26 | 4.5 | TATTTTTTTAATATT | ||
| Oceanobacillus iheyensis HTE831 | OB2453 | -58 | 4.8 | AATTTTCAGTATATT |
|
Position: -208
Score: 5 Sequence: AATAGTCAGAAAATT
Locus tag: BB14905_06853
|
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| BB14905_06853 | -208 | 5 | AATAGTCAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: Nitrogen regulatory protein P-II | ||||
| Bacillus licheniformis DSM 13 | BLi01176 | -103 | 5 | ATTTTTTTGAAAATT |
| Oceanobacillus iheyensis HTE831 | OB1212 | -113 | 4.6 | AATTTTCTAAAAACA |
|
Position: -117
Score: 4.6 Sequence: ATTTGTCAGACAATT
Locus tag: BB14905_15845
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| BB14905_15845 | -117 | 4.6 | ATTTGTCAGACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppB | ||||
| Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11440 | -116 | 4.3 | AATAATCAGAAAAGA |
| Bacillus amyloliquefaciens FZB42 | RBAM_011440 | -115 | 4.3 | AATAATCAGAAAAGA |
| Bacillus licheniformis DSM 13 | BLi01233 | -30 | 4.3 | AATAGACTGAATATT |
|
Position: -315
Score: 4.7 Sequence: AATTTTTAGAAAAAA
Position: -154
Score: 4.4 Sequence: AATTTAAAGAAAAAT
Locus tag: BB14905_07738
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| BB14905_07738 | -315 | 4.7 | AATTTTTAGAAAAAA | |
| -154 | 4.4 | AATTTAAAGAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yclF | ||||
| Ortholog function: POT family proton (H+)-dependent oligopeptide transporter | ||||
| Bacillus pumilus SAFR-032 | BPUM_0343 | -187 | 4.5 | AATTTTAAATAAATT |
| Geobacillus kaustophilus HTA426 | GK2020 | -118 | 4.4 | TTTTTTCTTAATATT |
| -68 | 4.4 | ATTTTTTTGACAATA | ||
|
Position: -112
Score: 4.9 Sequence: TTTTTTCTGAAAATT
Locus tag: BB14905_04313
|
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| BB14905_04313 | -112 | 4.9 | TTTTTTCTGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lutA | ||||
| Ortholog function: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit | ||||
| Bacillus pumilus SAFR-032 | BPUM_1672 | -103 | 4.6 | AAATTTCAGAAATTT |
| Bacillus cereus ATCC 14579 | BC1303 | -165 | 4.5 | AATCTTTTAAAAATT |
| -149 | 4.6 | AATTTTCTGATAAAA | ||
| Bacillus halodurans C-125 | BH1832 | -123 | 4.4 | ATTTATCAGTAAATT |
|
Position: -76
Score: 4.8 Sequence: AATTTACTAAAAATT
Locus tag: BB14905_19815
|
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| BB14905_19815 | -76 | 4.8 | AATTTACTAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvA | ||||
| Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU21770 | -68 | 4.8 | TATTTTTTGAATATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_019920 | -75 | 4.4 | AATTGTCTTATTATT |
| -67 | 4.5 | TATTATTTGAATATT | ||
| Bacillus pumilus SAFR-032 | BPUM_1911 | -64 | 4.8 | TATTTTTTGAATATT |
| Bacillus licheniformis DSM 13 | BLi02315 | -97 | 4.6 | AATATTCTGTAAATA |
| Anoxybacillus flavithermus WK1 | Aflv_1453 | -99 | 5 | ATTTTTTAGAAAATT |
|
Position: -230
Score: 4.5 Sequence: ACTTTTTTGATAATT
Locus tag: BB14905_01245
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| BB14905_01245 | -230 | 4.5 | ACTTTTTTGATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybxG | ||||
| Ortholog function: Amino acid permease | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU02060 | -257 | 4.8 | AATATTCAAATAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_002460 | -268 | 4.4 | TATTATCTTAATATT |
| Bacillus licheniformis DSM 13 | BLi00220 | -241 | 4.4 | TATTATAAGAATATT |
|
Position: -89
Score: 4.7 Sequence: AATTTTCTGACTAAT
Locus tag: BB14905_12000
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| BB14905_12000 | -89 | 4.7 | AATTTTCTGACTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppC | ||||
| Ortholog function: Oligopeptide ABC transporter permease | ||||
| Bacillus halodurans C-125 | BH0030 | -46 | 4.5 | ATTTGTCAAAATATT |
| Oceanobacillus iheyensis HTE831 | OB3067 | -112 | 4.5 | TATTTTTACAAAATT |
|
Position: -109
Score: 4.7 Sequence: ATTTTTCTAACAATT
Locus tag: BB14905_07249
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| BB14905_07249 | -109 | 4.7 | ATTTTTCTAACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppB | ||||
| Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | ||||
| Bacillus pumilus SAFR-032 | BPUM_1071 | -38 | 4.4 | AATATACAGAAAAGT |
| Anoxybacillus flavithermus WK1 | Aflv_2132 | -102 | 4.6 | AAATGTTAGAAAATT |
| Bacillus cereus ATCC 14579 | BC1180 | -65 | 4.4 | TATTTTAAAAAAATA |
|
Position: -82
Score: 4.2 Sequence: AATTATGTGAATATA
Locus tag: BB14905_13080
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| BB14905_13080 | -82 | 4.2 | AATTATGTGAATATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutG | ||||
| Ortholog function: Formiminoglutamase (EC 3.5.3.8) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU39380 | -25 | 4.1 | AGTTATCAGAATTTT |
| Bacillus amyloliquefaciens FZB42 | RBAM_036440 | -36 | 4.5 | AGTTATCAGAATATT |
|
Position: -87
Score: 4.3 Sequence: AATAATTAGATTATT
Locus tag: BB14905_10905
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| BB14905_10905 | -87 | 4.3 | AATAATTAGATTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqjP | ||||
| Ortholog function: Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0983 | -117 | 4.6 | TATTTTCTGAATTTT |
| -108 | 4.4 | AATTTTTTAATAAAT | ||
| Bacillus cereus ATCC 14579 | BC4133 | -90 | 4.3 | TTTTATCTGAAAATA |
|
Position: -194
Score: 4.3 Sequence: AATATTAAGAATTTT
Locus tag: BB14905_22413
|
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| BB14905_22413 | -194 | 4.3 | AATATTAAGAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_010260 | -75 | 4.4 | AAAAATCAAAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2293 | -91 | 4.5 | TATTTTTTAAAAAAT |
| -90 | 4.7 | ATTTTTTAAAAAATT | ||
|
Position: -253
Score: 4.9 Sequence: AATTTTCTTATAATT
Locus tag: BB14905_22858
|
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| BB14905_22858 | -253 | 4.9 | AATTTTCTTATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase, cytochrome b subunit | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_025520 | -98 | 4.5 | AATTGTCAATAAATT |
| Bacillus pumilus SAFR-032 | BPUM_2503 | -161 | 4.5 | AAATTTCGGAAAATT |
| -94 | 4.5 | AATTGTCAATAAATT | ||
| Bacillus licheniformis DSM 13 | BLi02994 | -184 | 4.5 | AATTTTCAAAAATAT |
| -165 | 4.9 | AAATTTTAGAAAATT | ||
|
Position: -34
Score: 4.9 Sequence: AATTATAAGAAAATT
Locus tag: BB14905_22863
|
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| BB14905_22863 | -34 | 4.9 | AATTATAAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yslB | ||||
| Ortholog function: Predicted hydrocarbon binding protein (V4R domain) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_025530 | -213 | 4.5 | AATTTATTGACAATT |
| Bacillus pumilus SAFR-032 | BPUM_2504 | -201 | 4.5 | AATTTATTGACAATT |
| -134 | 4.5 | AATTTTCCGAAATTT | ||
| Bacillus licheniformis DSM 13 | BLi02995 | -151 | 4.9 | AATTTTCTAAAATTT |
| -132 | 4.5 | ATATTTTTGAAAATT | ||
|
Position: -129
Score: 4.3 Sequence: AATTTTCTGAAATCA
Locus tag: BB14905_10995
|
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| BB14905_10995 | -129 | 4.3 | AATTTTCTGAAATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metI | ||||
| Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11870 | -297 | 4.6 | AATTATTAGAAATTT |
| -214 | 4.3 | AACAATCAGAAAATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_011930 | -314 | 4.6 | AATTATTAGAAATTT |
| Bacillus pumilus SAFR-032 | BPUM_1119 | -297 | 4.4 | AAAATACAGAAAATT |
| -287 | 4.1 | AAATTTCAATTAATT | ||
| Bacillus licheniformis DSM 13 | BLi01289 | -164 | 4 | AACAATCAGAATATT |
| Anoxybacillus flavithermus WK1 | Aflv_2067 | -228 | 4.4 | ATTTTTCGGAAAATA |
| -200 | 4.6 | AAAAATCAGAAAATT | ||
| Geobacillus kaustophilus HTA426 | GK0866 | -341 | 4.5 | AAATTTAAAAAAATT |
| Bacillus cereus ATCC 14579 | BC4253 | -344 | 4.4 | AATTTTTTAATAAAT |
| Paenibacillus sp. JDR-2 | Pjdr2_4798 | -6 | 4.4 | AACTTTATGAAAATT |
|
Position: -332
Score: 4.5 Sequence: CATATTTAGAAAATT
Locus tag: BB14905_11035
|
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| BB14905_11035 | -332 | 4.5 | CATATTTAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvD | ||||
| Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU21870 | -64 | 4.5 | AATAAACTGAAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_020010 | -56 | 4.5 | AATAAACTGAAAATT |
| Bacillus pumilus SAFR-032 | BPUM_1922 | -83 | 4.5 | AATAAACAGAAAATT |
| Bacillus licheniformis DSM 13 | BLi02324 | -51 | 4.8 | AATATTCAGAATATA |
| Bacillus halodurans C-125 | BH3062 | -217 | 4.3 | AATAGTCAAATTATT |
| -111 | 4.5 | TATTTTTTGACTATT | ||