Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Geobacillus sp. WCH70

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus sp. WCH70
Orthologous TF(s) GWCH70_1107
Regulated genes 55
Built upon 445 sites [see more]
Predicted regulatory interactions in Geobacillus sp. WCH70
Locus tag Position Score Sequence
Position: -83
Score: 4.3
Sequence: AATTTTCAAAAAAAG
Locus tag: GWCH70_0044
GWCH70_0044 -83 4.3 AATTTTCAAAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoVG
Ortholog function: Stage V sporulation protein G required for spore cortex synthesis
Bacillus subtilis subsp. subtilis str. 168 BSU00490 -98 4.4 TTTTTTCAAAAAATA
Geobacillus kaustophilus HTA426 GK0042 -96 4.6 AATTTATAAAAAATT
Bacillus cereus ATCC 14579 BC0053 -87 5.1 AATTTTTAAAAAATT
Position: -28
Score: 4
Sequence: AAAATTAAAAAAATA
Locus tag: GWCH70_0280
GWCH70_0280 -28 4 AAAATTAAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutP
Ortholog function: Hut operon positive regulatory protein
Bacillus subtilis subsp. subtilis str. 168 BSU39340 -25 4.1 AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42 RBAM_036400 -36 4.5 AGTTATCAGAATATT
Bacillus cereus ATCC 14579 BC3653 -36 4.8 AATATTCAAATAATT
Position: -107
Score: 4.4
Sequence: AATTTTCATAAAAGA
Locus tag: GWCH70_0392
GWCH70_0392 -107 4.4 AATTTTCATAAAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutA
Ortholog function: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Bacillus pumilus SAFR-032 BPUM_1672 -103 4.6 AAATTTCAGAAATTT
Bacillus cereus ATCC 14579 BC1303 -165 4.5 AATCTTTTAAAAATT
-149 4.6 AATTTTCTGATAAAA
Bacillus halodurans C-125 BH1832 -123 4.4 ATTTATCAGTAAATT
Position: -108
Score: 4.6
Sequence: AATTTTTTGTAAATA
Locus tag: GWCH70_0477
GWCH70_0477 -108 4.6 AATTTTTTGTAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Anoxybacillus flavithermus WK1 Aflv_0356 -48 4.7 AATTTTTTGAATTTT
-26 4.5 TATTTTTTTAATATT
Oceanobacillus iheyensis HTE831 OB2453 -58 4.8 AATTTTCAGTATATT
Position: -95
Score: 4.7
Sequence: TATTTTTTGAAAAAT
Locus tag: GWCH70_0638
GWCH70_0638 -95 4.7 TATTTTTTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Bacillus amyloliquefaciens FZB42 RBAM_010260 -75 4.4 AAAAATCAAAAAATT
Anoxybacillus flavithermus WK1 Aflv_2293 -91 4.5 TATTTTTTAAAAAAT
-90 4.7 ATTTTTTAAAAAATT
Position: -49
Score: 4.7
Sequence: AATTTTTAGATAATA
Locus tag: GWCH70_0661
GWCH70_0661 -49 4.7 AATTTTTAGATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: azlC
Ortholog function: Branched-chain amino acid permease (azaleucine resistance)
Anoxybacillus flavithermus WK1 Aflv_2051 -29 4.9 AATTTTATGAAAATA
Geobacillus kaustophilus HTA426 GK0673 -51 4.7 AATTTTTAGACAATA
Position: -84
Score: 4.3
Sequence: TGTTTTTTGAAAATA
Locus tag: GWCH70_0667
GWCH70_0667 -84 4.3 TGTTTTTTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -45
Score: 4.3
Sequence: AATTTTGTTATAATT
Locus tag: GWCH70_0799
GWCH70_0799 -45 4.3 AATTTTGTTATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcG
Ortholog function: RNA ligase/cyclic nucleotide phosphodiesterase
Bacillus subtilis subsp. subtilis str. 168 BSU11850 -73 4.6 AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_011910 -70 4.6 AAATTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1117 -140 4.4 AATTTTCTGTATTTT
Anoxybacillus flavithermus WK1 Aflv_2073 -35 4.7 TATTTTCCGAAAATT
Geobacillus kaustophilus HTA426 GK0864 -172 4.5 AATTTTTTTAAATTT
Position: -163
Score: 4.4
Sequence: AATTTTTTAAATTTT
Locus tag: GWCH70_0800
GWCH70_0800 -163 4.4 AATTTTTTAAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycjH
Ortholog function: Putative acetyl esterase YjcH (EC 3.1.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU11860 -73 4.6 AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_011920 -70 4.6 AAATTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1118 -140 4.4 AATTTTCTGTATTTT
Geobacillus kaustophilus HTA426 GK0865 -172 4.5 AATTTTTTTAAATTT
Position: -273
Score: 4.4
Sequence: AAAATTTAAAAAATT
Position: -272
Score: 4.1
Sequence: AAATTTAAAAAATTT
Locus tag: GWCH70_0801
GWCH70_0801 -273 4.4 AAAATTTAAAAAATT
-272 4.1 AAATTTAAAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -95
Score: 4.5
Sequence: TTTTTTTTGAATATT
Locus tag: GWCH70_0824
GWCH70_0824 -95 4.5 TTTTTTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amhX
Ortholog function: Amidohydrolase amhX (EC 3.5.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU03010 -116 4.3 ATTATTCTGAATAGT
Bacillus amyloliquefaciens FZB42 RBAM_003250 -104 4.6 ACTATTCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_0275 -116 5 AATTTTCAGAATAAT
Position: -292
Score: 4.8
Sequence: AATATTCTAATAATT
Locus tag: GWCH70_0828
GWCH70_0828 -292 4.8 AATATTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcB
Ortholog function: Hypothetical Membrane Spanning Protein
Geobacillus kaustophilus HTA426 GK0929 -130 4.5 ATTTTTCAGATAAAT
Position: -64
Score: 4.6
Sequence: AAGTATCAGAAAATT
Locus tag: GWCH70_0966
GWCH70_0966 -64 4.6 AAGTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzI
Ortholog function: Hypothetical protein
Bacillus cereus ATCC 14579 BC3959 -74 4.6 AAAAATCAGAAAATT
Position: -36
Score: 4.5
Sequence: AATTTTTAAACAAAT
Locus tag: GWCH70_1284
GWCH70_1284 -36 4.5 AATTTTTAAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: GK1369
Ortholog function: Predicted histidine uptake transporter
Geobacillus kaustophilus HTA426 GK1369 -102 4.3 AAAATTCAAAAAAAT
Position: -62
Score: 4.5
Sequence: ACTTTTCAGAATAAT
Locus tag: GWCH70_1506
GWCH70_1506 -62 4.5 ACTTTTCAGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus pumilus SAFR-032 BPUM_1860 -62 4.9 TTTTTTCAGAAAATT
Bacillus halodurans C-125 BH0858 26 4.4 ATTTTTCAGTAAATA
Oceanobacillus iheyensis HTE831 OB0994 -56 4.4 TATTATCAGATTATT
Position: -89
Score: 4.5
Sequence: AACTTTTTGAAAATT
Locus tag: GWCH70_1584
GWCH70_1584 -89 4.5 AACTTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168 BSU21770 -68 4.8 TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_019920 -75 4.4 AATTGTCTTATTATT
-67 4.5 TATTATTTGAATATT
Bacillus pumilus SAFR-032 BPUM_1911 -64 4.8 TATTTTTTGAATATT
Bacillus licheniformis DSM 13 BLi02315 -97 4.6 AATATTCTGTAAATA
Anoxybacillus flavithermus WK1 Aflv_1453 -99 5 ATTTTTTAGAAAATT
Position: -48
Score: 4.6
Sequence: AATTATCAAAAATTT
Locus tag: GWCH70_2197
GWCH70_2197 -48 4.6 AATTATCAAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168 BSU23070 -44 4.5 AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42 RBAM_021220 -44 4.5 AATTATCAGATATTT
Bacillus pumilus SAFR-032 BPUM_2039 -45 4.5 AATTATCAGATATTT
Bacillus licheniformis DSM 13 BLi02446 -43 4.5 AATTATCAGATATTT
Anoxybacillus flavithermus WK1 Aflv_1055 -47 4.8 AATTATCAGAAATTT
Geobacillus kaustophilus HTA426 GK2247 -86 4.8 AATTATCAGAAATTT
Position: -140
Score: 4.2
Sequence: ATTATTCATAAATTT
Locus tag: GWCH70_2349
GWCH70_2349 -140 4.2 ATTATTCATAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032 BPUM_0421 -252 5 AATTTTCTAAAAATA
-230 4.4 AATAGTATGAAAATA
Anoxybacillus flavithermus WK1 Aflv_1459 -140 4.9 ATTTTTCTGACAATT
Bacillus cereus ATCC 14579 BC1389 -88 4.6 AAAATTCAGAAAATA
Bacillus halodurans C-125 BH3820 -258 4.4 TATTTTTTGAAAAAA
Bacillus clausii KSM-K16 ABC3908 -77 4.3 AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831 OB0021 -36 4.9 AATTTTCTGAAAAAA
Position: -136
Score: 4.8
Sequence: AATATTCAAAAAATA
Position: -89
Score: 4.7
Sequence: AATTTTCAAATAAAT
Locus tag: GWCH70_2597
GWCH70_2597 -136 4.8 AATATTCAAAAAATA
-89 4.7 AATTTTCAAATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -166 4.7 AATTGTCTAATAATT
-54 4.6 AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13 BLi02962 -192 4.7 AATTGTCTAATAATT
Anoxybacillus flavithermus WK1 Aflv_0590 -136 4.8 AATAATCAAAAAATT
-79 4.7 AATTTTCAAATAAAT
Bacillus cereus ATCC 14579 BC1396 -167 4.4 AATTTTTTGACTTTT
-88 5.3 AATTTTCTAAAAATT
Position: -226
Score: 4.3
Sequence: AAAAGTCAGATAATT
Locus tag: GWCH70_2679
GWCH70_2679 -226 4.3 AAAAGTCAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -184
Score: 4
Sequence: TATTTTTAAAAGATA
Position: -158
Score: 4.2
Sequence: TATTTTCAAAAGATA
Locus tag: GWCH70_2708
GWCH70_2708 -184 4 TATTTTTAAAAGATA
-158 4.2 TATTTTCAAAAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -182 4 atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42 RBAM_026400 -172 4.6 ATTTATCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2579 -206 4.7 ATTATTCAGAAAATA
Bacillus licheniformis DSM 13 BLi03086 -194 4.8 TATATTCAGAAAATA
Position: -100
Score: 4.5
Sequence: TATTTTTTAAAAATA
Position: -89
Score: 4.6
Sequence: AATATTCAAAATATA
Locus tag: GWCH70_2716
GWCH70_2716 -100 4.5 TATTTTTTAAAAATA
-89 4.6 AATATTCAAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus pumilus SAFR-032 BPUM_2600 -158 4.6 AATAGTTTGAATATT
Bacillus cereus ATCC 14579 BC4645 -58 4.7 AATTAACTGAAAATT
Oceanobacillus iheyensis HTE831 OB2643 -96 4.5 TATAATCAGAATATT
Position: -78
Score: 5.1
Sequence: AATTTTTAAAAAATT
Locus tag: GWCH70_2729
GWCH70_2729 -78 5.1 AATTTTTAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -78 4.6 TATATTTTAAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_026800 -73 4.6 TATATTTTAAAAATT
Bacillus pumilus SAFR-032 BPUM_2616 -77 4.6 AGTTTTTTAAAAATT
Bacillus licheniformis DSM 13 BLi03119 -74 4.8 TATTTTTTAAAAATT
Anoxybacillus flavithermus WK1 Aflv_0462 -77 5.1 AATTTTTTAAAAATT
Geobacillus kaustophilus HTA426 GK2806 -102 4.4 AAATTTCAAAAAAGT
-77 4.9 AATATTTTAAAAATT
Bacillus cereus ATCC 14579 BC4659 -69 4.8 AATATACTGAAAATT
Position: -110
Score: 5.1
Sequence: AATTTTTTAAAAATT
Locus tag: GWCH70_2730
GWCH70_2730 -110 5.1 AATTTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -97 4.6 AATTTTTAAAATATA
Bacillus amyloliquefaciens FZB42 RBAM_026810 -100 4.6 AATTTTTAAAATATA
Bacillus pumilus SAFR-032 BPUM_2617 -93 4.6 AATTTTTAAAAAACT
Bacillus licheniformis DSM 13 BLi03120 -96 4.8 AATTTTTAAAAAATA
Anoxybacillus flavithermus WK1 Aflv_0461 -101 5.1 AATTTTTAAAAAATT
Geobacillus kaustophilus HTA426 GK2807 -112 4.9 AATTTTTAAAATATT
-87 4.4 ACTTTTTTGAAATTT
Bacillus cereus ATCC 14579 BC4660 -110 4.8 AATTTTCAGTATATT
Oceanobacillus iheyensis HTE831 OB2221 -85 4.6 AAATTTCAAAAAATA
Position: -36
Score: 4.9
Sequence: TATTATCAGAAAATT
Locus tag: GWCH70_2882
GWCH70_2882 -36 4.9 TATTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus licheniformis DSM 13 BLi03391 -35 4.9 TATTATCAGAAAATT
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