Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RmgR regulog to Oceanobacillus iheyensis HTE831

Reference regulog properties
Source regulog: RmgR - Bacillales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Oceanobacillus iheyensis HTE831
Orthologous TF(s) OB2093
Regulated genes 5
Built upon 10 sites [see more]
Predicted regulatory interactions in Oceanobacillus iheyensis HTE831
Locus tag Position Score Sequence
Position: -5
Score: 5.2
Sequence: TTTTTA-(13)-TAATTT
Position: 14
Score: 5.7
Sequence: TAATTT-(13)-CCATTA
Locus tag: OB2086
OB2086 -5 5.2 TTTTTA-(13)-TAATTT
14 5.7 TAATTT-(13)-CCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN2
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacillus subtilis subsp. subtilis str. 168 BSU30120 -154 7.7 TCATTT-(13)-TCTTTT
Bacillus pumilus SAFR-032 BPUM_2659 -223 6.7 CCATTT-(12)-TCTTTT
-155 8.2 TCATTT-(13)-TCATTT
Bacillus licheniformis DSM 13 BLi03165 -139 8.2 TCATTT-(13)-TCATTT
Bacillus halodurans C-125 BH0485 -155 7.7 TCATTA-(13)-TCATTT
Bacillus clausii KSM-K16 ABC1149 -174 5.3 TCATTT-(13)-gCAaaT
Oceanobacillus iheyensis HTE831 OB2086 -169 6.7 TCAATT-(12)-TCATTA
Position: -23
Score: 5.3
Sequence: ATATTT-(12)-TCATAT
Locus tag: OB2089
OB2089 -23 5.3 ATATTT-(12)-TCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcP
Ortholog function: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Bacillus subtilis subsp. subtilis str. 168 BSU30170 -206 7.7 TCATTT-(13)-TCTTTT
Bacillus licheniformis DSM 13 BLi03169 -208 6.7 TCATCT-(13)-TCTTTT
Bacillus clausii KSM-K16 ABC1146 -174 5.3 TCATTT-(13)-gCAaaT
Oceanobacillus iheyensis HTE831 OB2089 -169 6.7 TCAATT-(12)-TCATTA
Paenibacillus sp. JDR-2 Pjdr2_1804 -141 6.7 TCAATT-(13)-TCATTA
Position: -317
Score: 6.3
Sequence: TCCTGT-(12)-TCATTT
Position: -226
Score: 5.2
Sequence: TTTTTT-(12)-TTATTA
Position: -192
Score: 5.3
Sequence: TCGCTT-(12)-TCATGT
Position: -169
Score: 6.7
Sequence: TCAATT-(12)-TCATTA
Locus tag: OB2090
OB2090 -317 6.3 TCCTGT-(12)-TCATTT
-226 5.2 TTTTTT-(12)-TTATTA
-192 5.3 TCGCTT-(12)-TCATGT
-169 6.7 TCAATT-(12)-TCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yteP
Ortholog function: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Bacillus subtilis subsp. subtilis str. 168 BSU30135 -154 7.7 TCATTT-(13)-TCTTTT
Bacillus pumilus SAFR-032 BPUM_2660 -223 6.7 CCATTT-(12)-TCTTTT
-155 8.2 TCATTT-(13)-TCATTT
Bacillus licheniformis DSM 13 BLi03166 -139 8.2 TCATTT-(13)-TCATTT
Bacillus halodurans C-125 BH0484 -155 7.7 TCATTA-(13)-TCATTT
Bacillus clausii KSM-K16 ABC1145 -174 5.3 TCATTT-(13)-gCAaaT
Oceanobacillus iheyensis HTE831 OB2090 -169 6.7 TCAATT-(12)-TCATTA
Paenibacillus sp. JDR-2 Pjdr2_1803 -141 6.7 TCAATT-(13)-TCATTA
Position: -219
Score: 5.3
Sequence: AGATTT-(12)-TCATAT
Position: 19
Score: 5.2
Sequence: TGTTTA-(12)-TTATTT
Locus tag: OB2091
OB2091 -219 5.3 AGATTT-(12)-TCATAT
19 5.2 TGTTTA-(12)-TTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcQ
Ortholog function: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Bacillus clausii KSM-K16 ABC1144 -174 5.3 TCATTT-(13)-gCAaaT
Paenibacillus sp. JDR-2 Pjdr2_1802 -141 6.7 TCAATT-(13)-TCATTA
Position: -39
Score: 5.3
Sequence: ACATTT-(12)-TCACAT
Position: -26
Score: 5.3
Sequence: TGAATT-(12)-TGATTT
Locus tag: OB3207
OB3207 -39 5.3 ACATTT-(12)-TCACAT
-26 5.3 TGAATT-(12)-TGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yteU
Ortholog function: Putative membrane enzyme for rhamnogalaturonan degradation
Bacillus halodurans C-125 BH0488 -155 7.7 TCATTA-(13)-TCATTT
Bacillus clausii KSM-K16 ABC1151 -174 5.3 TCATTT-(13)-gCAaaT
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