Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Lysinibacillus sphaericus C3-41

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Lysinibacillus sphaericus C3-41
Orthologous TF(s) Bsph_3885
Regulated genes 6
Built upon 65 sites [see more]
Predicted regulatory interactions in Lysinibacillus sphaericus C3-41
Locus tag Position Score Sequence
Position: -42
Score: 5.6
Sequence: TAAAACCTATAAAAATAGTAGGGATTG
Locus tag: Bsph_0093
Bsph_0093 -42 5.6 TAAAACCTATAAAAATAGTAGGGATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -286
Score: 6
Sequence: TTATTCTTATTATATTACTAAGAATTA
Locus tag: Bsph_0589
Bsph_0589 -286 6 TTATTCTTATTATATTACTAAGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylnD
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Bacillus amyloliquefaciens FZB42 RBAM_015440 -299 4.7 TTATTCCTATCAAAAAACTCGGGTTGA
Anoxybacillus flavithermus WK1 Aflv_0312 -48 5.6 TTAATCCTAGTTGTTTTATAAGAATAA
Oceanobacillus iheyensis HTE831 OB1655 -98 5.4 CAATTCACATTGTATTACTATGAATTA
Position: -118
Score: 5.7
Sequence: TAATTCCTTGTTGACTAATAGGAAATA
Locus tag: Bsph_0597
Bsph_0597 -118 5.7 TAATTCCTTGTTGACTAATAGGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: subI
Ortholog function: Sulfate ABC transporter (sulfate-binding protein)
Bacillus cereus ATCC 14579 BC1090 -158 5.4 AAATTCCAAGTTGACACATATGAATTA
Bacillus cereus ATCC 14579 BC1091 -158 5.4 AAATTCCAAGTTGACACATATGAATTA
Bacillus halodurans C-125 BH3127 -142 4.8 TAAAACCCACTTGACAGATGGGGATTA
-50 4.6 TAAAACAGACTTTTCCGATCTGTTTTA
Paenibacillus sp. JDR-2 Pjdr2_4823 -96 4.7 CATAACCAACTAAACAGGTAGGAATAA
Position: -315
Score: 5.7
Sequence: TATTTCCTATTAGTCAACAAGGAATTA
Locus tag: Bsph_0598
Bsph_0598 -315 5.7 TATTTCCTATTAGTCAACAAGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysH
Ortholog function: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
Bacillus amyloliquefaciens FZB42 RBAM_015400 -299 4.7 TTATTCCTATCAAAAAACTCGGGTTGA
Anoxybacillus flavithermus WK1 Aflv_0316 -100 5.1 AAATTCCGATAGAAAAACTAGGATTGA
Bacillus halodurans C-125 BH1486 -73 5.3 TAAATCATATCAAATTACATGGAATTA
Bacillus clausii KSM-K16 ABC0611 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Oceanobacillus iheyensis HTE831 OB1652 -98 5.4 CAATTCACATTGTATTACTATGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5647 -45 5.2 AATAGCATATGAATTTACTTGGAATTA
Position: -120
Score: 5.6
Sequence: TAAAACATACTTGAATTATAGGGATTA
Locus tag: Bsph_0754
Bsph_0754 -120 5.6 TAAAACATACTTGAATTATAGGGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcL
Ortholog function: Sodium-cystine symporter
Bacillus subtilis subsp. subtilis str. 168 BSU09130 -73 5.2 TAATTCGCACTTGACCCATCGGAATTA
Bacillus licheniformis DSM 13 BLi00975 -77 5.1 TAATTCCTACTTGACCAATCAGGTTTG
Bacillus cereus ATCC 14579 BC4242 -72 5.5 AATTTCATAGTTGACTTATAGGTTTTA
-39 4.8 TATATTCTATATAACAGATTGGAATTA
Bacillus clausii KSM-K16 ABC2897 -78 5.2 TAATTCCCACTTGACTCATATGATTAT
Oceanobacillus iheyensis HTE831 OB2714 -56 6.2 TAATTCGTAGTAAATTAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_6037 -148 5.1 AATTCCCCATAGAAATAGTCGGATTTA
-41 5 TAATTCCAATCAAACAACTTGGATTAG
Position: -52
Score: 5.9
Sequence: TAATTCTTAGTAAATATATAAGATTTA
Locus tag: Bsph_4688
Bsph_4688 -52 5.9 TAATTCTTAGTAAATATATAAGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbM
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bacillus subtilis subsp. subtilis str. 168 BSU04520 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Bacillus pumilus SAFR-032 BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
-61 4.9 TTATTCCGATTGGAAAAATCAGATATG
Bacillus licheniformis DSM 13 BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Oceanobacillus iheyensis HTE831 OB0293 -45 5.5 TTATACCTATTGACTTACTAGGCATTA
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