Propagation of Fnr regulog to Xenorhabdus bovienii SS-2004
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Xenorhabdus bovienii SS-2004 |
| Orthologous TF(s) | XBJ1_2353 |
| Regulated genes | 53 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -50
Score: 4 Sequence: TTTCTATCAATCAA
Locus tag: XBJ1_0027
|
||||
| XBJ1_0027 | -50 | 4 | TTTCTATCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpE | ||||
| Ortholog function: ATP synthase C chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00077 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4127 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3479 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4517 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3737 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04142 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0045 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3059 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3870 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -335
Score: 3.8 Sequence: TTGATTTTAATTGA
Position: -325
Score: 3.8 Sequence: TTGAAAAAAATAAA
Position: -312
Score: 4.1 Sequence: ATGATTTTTATCAC
Position: -259
Score: 4 Sequence: GTGATATACATCAC
Locus tag: XBJ1_0029
|
||||
| XBJ1_0029 | -335 | 3.8 | TTGATTTTAATTGA | |
| -325 | 3.8 | TTGAAAAAAATAAA | ||
| -312 | 4.1 | ATGATTTTTATCAC | ||
| -259 | 4 | GTGATATACATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -229
Score: 3.8 Sequence: TTGAGAGAAATTAA
Locus tag: XBJ1_0051
|
||||
| XBJ1_0051 | -229 | 3.8 | TTGAGAGAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -187
Score: 3.8 Sequence: TTATTTTTCGTCAA
Position: -131
Score: 3.8 Sequence: TTGATAAAAATAAC
Locus tag: XBJ1_0089
|
||||
| XBJ1_0089 | -187 | 3.8 | TTATTTTTCGTCAA | |
| -131 | 3.8 | TTGATAAAAATAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |
|
Position: 31
Score: 3.5 Sequence: TTGATTCGATTCAG
Locus tag: XBJ1_0091
|
||||
| XBJ1_0091 | 31 | 3.5 | TTGATTCGATTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -232 | 4.7 | TTGTTATATAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -397 | 3.9 | TTGATCCTGATAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -272 | 4 | ATGATGAATGACAA |
| Proteus mirabilis HI4320 | PMI3008 | -176 | 3.6 | TTTAGTGAGGTCAA |
| Salmonella typhimurium LT2 | STM1299 | -51 | 3.4 | CTGATAAAACGCAA |
| Yersinia pestis KIM | y3858 | -231 | 3.6 | TTGAGTAACGTTAA |
|
Position: -183
Score: 5.2 Sequence: TTGATTAATATCAA
Locus tag: XBJ1_0165
|
||||
| XBJ1_0165 | -183 | 5.2 | TTGATTAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -49
Score: 4.2 Sequence: TTGTTTTTAATTAA
Locus tag: XBJ1_0188
|
||||
| XBJ1_0188 | -49 | 4.2 | TTGTTTTTAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pstS | ||||
| Ortholog function: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00065 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3538 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4477 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3728 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0214 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2893 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -282
Score: 3.9 Sequence: GTGATCTATATCAC
Locus tag: XBJ1_0537
|
||||
| XBJ1_0537 | -282 | 3.9 | GTGATCTATATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -151 | 4 | TTAATCAGAATCAA |
| Enterobacter sp. 638 | Ent638_0343 | -31 | 3.6 | TTGCGGAATAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4124 | -239 | 4.1 | |
| Proteus mirabilis HI4320 | PMI3588 | -208 | 4 | |
| Salmonella typhimurium LT2 | STM4343 | -191 | 4.4 | TTAATCAAAATCAA |
| Serratia proteamaculans 568 | Spro_0419 | -63 | 3.7 | TTTATAAATATTAA |
|
Position: -135
Score: 3.7 Sequence: TTATTTTATATAAA
Position: -88
Score: 3.7 Sequence: CTGTTTTAAAAAAA
Locus tag: XBJ1_0541
|
||||
| XBJ1_0541 | -135 | 3.7 | TTATTTTATATAAA | |
| -88 | 3.7 | CTGTTTTAAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpQ | ||||
| Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00538 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3117 | -301 | 3.8 | GTGATCAAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4167 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02645 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4120 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3590 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2282 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0198 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -66
Score: 3.7 Sequence: TCGTTTAACATCAT
Locus tag: XBJ1_0542
|
||||
| XBJ1_0542 | -66 | 3.7 | TCGTTTAACATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -84
Score: 4.5 Sequence: ATGATCCATATCAA
Locus tag: XBJ1_0820
|
||||
| XBJ1_0820 | -84 | 4.5 | ATGATCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -232
Score: 3.5 Sequence: ATCAGAAATATCAA
Position: -85
Score: 3.4 Sequence: TTGTTGTATATGAC
Locus tag: XBJ1_0927
|
||||
| XBJ1_0927 | -232 | 3.5 | ATCAGAAATATCAA | |
| -85 | 3.4 | TTGTTGTATATGAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -201
Score: 3.5 Sequence: GTGATTAAAAATAA
Position: -169
Score: 3.5 Sequence: TTGACATTATTCAG
Position: -160
Score: 3.9 Sequence: TTCAGTTATAACAA
Position: 8
Score: 3.5 Sequence: TTGTCATACCTCAG
Locus tag: XBJ1_0947
|
||||
| XBJ1_0947 | -201 | 3.5 | GTGATTAAAAATAA | |
| -169 | 3.5 | TTGACATTATTCAG | ||
| -160 | 3.9 | TTCAGTTATAACAA | ||
| 8 | 3.5 | TTGTCATACCTCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -316
Score: 4 Sequence: TTGATGGATAACAG
Locus tag: XBJ1_0979
|
||||
| XBJ1_0979 | -316 | 4 | TTGATGGATAACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: -135
Score: 4.1 Sequence: CTGTTATCCATCAA
Position: 19
Score: 3.8 Sequence: ATGATTTAGATCGT
Locus tag: XBJ1_0980
|
||||
| XBJ1_0980 | -135 | 4.1 | CTGTTATCCATCAA | |
| 19 | 3.8 | ATGATTTAGATCGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -314
Score: 4.9 Sequence: TTGACTAAAATCAA
Locus tag: XBJ1_1053
|
||||
| XBJ1_1053 | -314 | 4.9 | TTGACTAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Proteus mirabilis HI4320 | PMI0573 | -312 | 4.5 | TTGATGTGGGTCAA |
| Yersinia pestis KIM | y3063 | -314 | 5.1 | TTGTTCTAAATCAA |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
|
Position: -299
Score: 3.6 Sequence: TTAATCCTTGTCAA
Position: -224
Score: 3.6 Sequence: ATGTTAATAATCAT
Position: 10
Score: 4 Sequence: TTGTGAAAAAACAA
Locus tag: XBJ1_1061
|
||||
| XBJ1_1061 | -299 | 3.6 | TTAATCCTTGTCAA | |
| -224 | 3.6 | ATGTTAATAATCAT | ||
| 10 | 4 | TTGTGAAAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -263
Score: 3.7 Sequence: TTCACGAAAAACAA
Locus tag: XBJ1_1062
|
||||
| XBJ1_1062 | -263 | 3.7 | TTCACGAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltA | ||||
| Ortholog function: Citrate synthase (EC 2.3.3.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02439 | -67 | 3.8 | TTGATTTATGTAAC |
| Enterobacter sp. 638 | Ent638_1221 | -147 | 3.6 | TCGCGCTAGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1167 | -171 | 3.7 | ATGATACTCATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4121 | -185 | 4.8 | TTTATCTAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0720 | -173 | 3.6 | TTATTCGTCATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00489 | 28 | 3.6 | TTGCCGGACAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1425 | -110 | 3.6 | TTGATGACAAAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3138 | -56 | 3.8 | CCTATTTAAATCAA |
| Salmonella typhimurium LT2 | STM0730 | -213 | 3.9 | TCGAAATTAATCAA |
|
Position: -225
Score: 4.4 Sequence: TTGTGTTAAAACAA
Position: -73
Score: 4.5 Sequence: TTTATTTTCATCAA
Locus tag: XBJ1_1455
|
||||
| XBJ1_1455 | -225 | 4.4 | TTGTGTTAAAACAA | |
| -73 | 4.5 | TTTATTTTCATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: C4-dicarboxylate transporter DcuA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -25 | 4.4 | TTGTTAAACAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -25 | 4.4 | TTGTTAAACAACAA |
| Enterobacter sp. 638 | Ent638_0325 | -25 | 3.8 | TTGTTAATAAGCAA |
| Enterobacter sp. 638 | Ent638_0325 | -25 | 3.8 | TTGTTAATAAGCAA |
| Erwinia amylovora ATCC 49946 | EAM_0415 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0620 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -25 | 4.5 | TTGTTAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -25 | 4.5 | TTGTTAAAAAACAA |
| Salmonella typhimurium LT2 | STM4325 | -25 | 4.4 | TTGTTAAACAACAA |
| Salmonella typhimurium LT2 | STM4325 | -25 | 4.4 | TTGTTAAACAACAA |
|
Position: -331
Score: 4 Sequence: TTGGTTTTCGTCAA
Position: 6
Score: 3.6 Sequence: TTGATGAATCCCAA
Locus tag: XBJ1_1646
|
||||
| XBJ1_1646 | -331 | 4 | TTGGTTTTCGTCAA | |
| 6 | 3.6 | TTGATGAATCCCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3875 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0108 | 9 | 3.6 | ATGAAATACATAAA |
| Serratia proteamaculans 568 | Spro_1090 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1021 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -9
Score: 3.4 Sequence: TTGACTTGAATGAT
Locus tag: XBJ1_1650
|
||||
| XBJ1_1650 | -9 | 3.4 | TTGACTTGAATGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoE | ||||
| Ortholog function: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02733 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0981 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0428 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00390 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3879 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0105 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0439 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1086 | -293 | 3.6 | TTCTTTTACATTAA |
|
Position: -165
Score: 3.8 Sequence: GTGATTTATAAAAA
Locus tag: XBJ1_1706
|
||||
| XBJ1_1706 | -165 | 3.8 | GTGATTTATAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hypB | ||||
| Ortholog function: [NiFe] hydrogenase nickel incorporation-associated protein HypB | ||||
| Salmonella typhimurium LT2 | STM2855 | -88 | 3.7 | TTGATGAAACTGAA |
|
Position: -123
Score: 4.8 Sequence: TTGACTTTTATCAA
Locus tag: XBJ1_2073
|
||||
| XBJ1_2073 | -123 | 4.8 | TTGACTTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -348
Score: 4 Sequence: TCGATATAAAACAT
Position: -36
Score: 4.8 Sequence: TTGACGTATATCAA
Locus tag: XBJ1_2353
|
||||
| XBJ1_2353 | -348 | 4 | TCGATATAAAACAT | |
| -36 | 4.8 | TTGACGTATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -232
Score: 4 Sequence: GTGATTTAGATCAC
Locus tag: XBJ1_2430
|
||||
| XBJ1_2430 | -232 | 4 | GTGATTTAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -77
Score: 4 Sequence: TTTATATACATAAA
Locus tag: XBJ1_2822
|
||||
| XBJ1_2822 | -77 | 4 | TTTATATACATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -263
Score: 4.2 Sequence: ATGACCTCAATCAA
Position: -56
Score: 3.7 Sequence: TTTTTTAACATCAT
Locus tag: XBJ1_2934
|
||||
| XBJ1_2934 | -263 | 4.2 | ATGACCTCAATCAA | |
| -56 | 3.7 | TTTTTTAACATCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -5
Score: 3.7 Sequence: TTGTTATGGATGAA
Locus tag: XBJ1_3288
|
||||
| XBJ1_3288 | -5 | 3.7 | TTGTTATGGATGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydeJ | ||||
| Ortholog function: Competence/damage-inducible protein CinA | ||||
| Edwardsiella tarda EIB202 | ETAE_2862 | -5 | 3.4 | TCGCTATGGAACAA |
| Enterobacter sp. 638 | Ent638_3132 | -81 | 4.1 | TTCAGTAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1537 | -195 | 3.5 | TTGTTATAAGGCAT |
| 7 | 3.5 | TTAATAGAGATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03032 | -26 | 3.5 | TTTATCCAGAGCAA |
| Proteus mirabilis HI4320 | PMI0374 | -19 | 3.5 | TCGAGGTGAAACAA |
| Salmonella typhimurium LT2 | STM2830 | -347 | 3.3 | TTGACCGCCGTCAT |
| Salmonella typhimurium LT2 | STM1514 | -238 | 3.6 | GTCATATGCATCAA |
| Yersinia pestis KIM | y0880 | -297 | 3.7 | TTGATCGCAGTTAA |
|
Position: 0
Score: 4.1 Sequence: ATGATTAAAATTAA
Locus tag: XBJ1_3324
|
||||
| XBJ1_3324 | 0 | 4.1 | ATGATTAAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00239 | 0 | 4.2 | ATGATTAAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1196 | -205 | 4.1 | TTGAACTAAATCAC |
| Proteus mirabilis HI4320 | PMI0352 | -205 | 4.2 | TTGAGCTAAATCAC |
| Serratia proteamaculans 568 | Spro_0953 | 0 | 4.3 | ATGATTAAAATCAG |
| Yersinia pestis KIM | y0951 | 18 | 4.2 | ATGATTAAAATAAA |
|
Position: -146
Score: 4.5 Sequence: ATGATTTAGCTCAA
Locus tag: XBJ1_3456
|
||||
| XBJ1_3456 | -146 | 4.5 | ATGATTTAGCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -283
Score: 4.9 Sequence: TTGATATGTATCAA
Locus tag: XBJ1_3517
|
||||
| XBJ1_3517 | -283 | 4.9 | TTGATATGTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -212
Score: 3.4 Sequence: GTGACTTCAATCAC
Position: -97
Score: 3.8 Sequence: GTGATTAATATCAC
Position: -64
Score: 3.4 Sequence: ATTATTCTCAACAA
Position: -3
Score: 3.5 Sequence: CTCATGTCAAACAA
Locus tag: XBJ1_3573
|
||||
| XBJ1_3573 | -212 | 3.4 | GTGACTTCAATCAC | |
| -97 | 3.8 | GTGATTAATATCAC | ||
| -64 | 3.4 | ATTATTCTCAACAA | ||
| -3 | 3.5 | CTCATGTCAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_0311 | 19 | 3.5 | TTGAAGAAGATCTA |
| Enterobacter sp. 638 | Ent638_0326 | -184 | 3.6 | TTAATAATTATCAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | 0 | 3.5 | ATGTTAAACAACAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -362 | 4.2 | TTGATTTGGATGAA |
| -198 | 3.8 | ATCACATATATCAA | ||
| Proteus mirabilis HI4320 | PMI2546 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -345
Score: 3.6 Sequence: ATGATCTCAGTCAC
Position: -308
Score: 3.8 Sequence: TTCTTTTAATTCAA
Position: -303
Score: 3.7 Sequence: TTAATTCAAATAAA
Locus tag: XBJ1_3852
|
||||
| XBJ1_3852 | -345 | 3.6 | ATGATCTCAGTCAC | |
| -308 | 3.8 | TTCTTTTAATTCAA | ||
| -303 | 3.7 | TTAATTCAAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03624 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3677 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4344 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0128 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -203
Score: 3.5 Sequence: ATGATTACGAACAT
Position: -116
Score: 3.4 Sequence: AAGATTTACATAAA
Position: -89
Score: 3.3 Sequence: TTTATTTTATTCAC
Locus tag: XBJ1_4001
|
||||
| XBJ1_4001 | -203 | 3.5 | ATGATTACGAACAT | |
| -116 | 3.4 | AAGATTTACATAAA | ||
| -89 | 3.3 | TTTATTTTATTCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: -202
Score: 3.9 Sequence: CTTATATATAACAA
Position: -113
Score: 4.1 Sequence: TTGATTTATTTAAA
Position: -109
Score: 4.2 Sequence: TTTATTTAAATTAA
Locus tag: XBJ1_4009
|
||||
| XBJ1_4009 | -202 | 3.9 | CTTATATATAACAA | |
| -113 | 4.1 | TTGATTTATTTAAA | ||
| -109 | 4.2 | TTTATTTAAATTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -197
Score: 3.8 Sequence: TTATTCATAATCAA
Position: -123
Score: 3.7 Sequence: TGGAGTTGAATCAA
Locus tag: XBJ1_4302
|
||||
| XBJ1_4302 | -197 | 3.8 | TTATTCATAATCAA | |
| -123 | 3.7 | TGGAGTTGAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |