Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Dickeya dadantii Ech703

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Dickeya dadantii Ech703
Orthologous TF(s) Dd703_1864
Regulated genes 56
Built upon 685 sites [see more]
Predicted regulatory interactions in Dickeya dadantii Ech703
Locus tag Position Score Sequence
Position: -245
Score: 4.3
Sequence: TTGATAAAGAGCAA
Position: 3
Score: 3.7
Sequence: TTGAGTATTTTCAA
Locus tag: Dd703_0247
Dd703_0247 -245 4.3 TTGATAAAGAGCAA
3 3.7 TTGAGTATTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -78
Score: 4.5
Sequence: TTGCTCTTTATCAA
Locus tag: Dd703_0248
Dd703_0248 -78 4.5 TTGCTCTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -135
Score: 3.8
Sequence: TCGATATAAAATAA
Locus tag: Dd703_0287
Dd703_0287 -135 3.8 TCGATATAAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhY
Ortholog function: Predicted oxidoreductase, Fe-S subunit
Citrobacter koseri ATCC BAA-895 CKO_01699 -162 4.7 TTGATAACGATCAA
Escherichia coli str. K-12 substr. MG1655 b1674 -214 4.7 TTGATAACGATCAA
-60 3.7 ATGCTTAATATCAG
Proteus mirabilis HI4320 PMI0070 -92 3.7 TTTATATACAACGA
Position: -31
Score: 3.6
Sequence: TTTATTTAACTTAA
Locus tag: Dd703_0471
Dd703_0471 -31 3.6 TTTATTTAACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -291
Score: 4.6
Sequence: TTGACATATGTCAA
Locus tag: Dd703_0570
Dd703_0570 -291 4.6 TTGACATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -136
Score: 3.3
Sequence: TTTTCTTTTATCAG
Locus tag: Dd703_0995
Dd703_0995 -136 3.3 TTTTCTTTTATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -148
Score: 4.3
Sequence: CTGATCCAGATCAA
Locus tag: Dd703_1064
Dd703_1064 -148 4.3 CTGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -97
Score: 4.3
Sequence: TTGATCTGGATCAG
Locus tag: Dd703_1065
Dd703_1065 -97 4.3 TTGATCTGGATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: 12
Score: 3.4
Sequence: CTGCTTGTCAACAA
Locus tag: Dd703_1282
Dd703_1282 12 3.4 CTGCTTGTCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfE
Ortholog function: Hydrogenase-4 component E (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1243 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2485 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2524 -114 4.9 TTGATTTTTAACAA
Position: -82
Score: 3.8
Sequence: TTGATTTCGCGCAA
Locus tag: Dd703_1335
Dd703_1335 -82 3.8 TTGATTTCGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1408 -81 3.9 TTGATTTTGCGCAA
Position: -152
Score: 5.4
Sequence: TTGATATAAATCAA
Locus tag: Dd703_1608
Dd703_1608 -152 5.4 TTGATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -222
Score: 3.5
Sequence: TTGACCTGAGGCAA
Locus tag: Dd703_1645
Dd703_1645 -222 3.5 TTGACCTGAGGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuE
Ortholog function: FMN reductase (EC 1.5.1.29)
Citrobacter koseri ATCC BAA-895 CKO_02124 -43 3.7 TTAATGAAAATCGA
Enterobacter sp. 638 Ent638_1456 -181 3.5 TTGACCTGAGGCAA
Escherichia coli str. K-12 substr. MG1655 b0937 -278 3.6 GCCATTTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00973 -182 3.8 TTGACCTGCGACAA
Serratia proteamaculans 568 Spro_1739 -256 4.6 TTGATTAAAAGCAA
Yersinia pestis KIM y0246 -252 3.7 GTGATCTGGCTCAA
Position: -260
Score: 4.4
Sequence: TTGACGCATATCAA
Locus tag: Dd703_1767
Dd703_1767 -260 4.4 TTGACGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Enterobacter sp. 638 Ent638_2317 -251 5.5 TTGATATAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -268 4.9 TTGATGCAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1222 -279 5.4 TTGATGTAAATCAA
-241 4.6 TTGATATTTATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02216 -251 5.5 TTGATATAAATCAA
Proteus mirabilis HI4320 PMI3569 -235 4.5 ATGATCTGCATCAA
Salmonella typhimurium LT2 STM1766 -281 5.5 TTGATATAAATCAA
Serratia proteamaculans 568 Spro_2899 -301 5.4 TTGATGTAAATCAA
Position: -162
Score: 4.3
Sequence: TTGATCGCTGTCAA
Locus tag: Dd703_1771
Dd703_1771 -162 4.3 TTGATCGCTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2031 -141 4.7 TTGATCGTTATCAA
Proteus mirabilis HI4320 PMI3571 -73 4.3
Serratia proteamaculans 568 Spro_2883 -140 4.7 TTGATCGCAATCAA
Position: -3
Score: 3.6
Sequence: ATGATGAAAGTCAC
Locus tag: Dd703_1794
Dd703_1794 -3 3.6 ATGATGAAAGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpB
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00535 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3114 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2806 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4164 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2242 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02648 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3593 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2285 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0201 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0405 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -34
Score: 4.1
Sequence: TTGACCGGTATCAA
Locus tag: Dd703_1864
Dd703_1864 -34 4.1 TTGACCGGTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -159
Score: 5
Sequence: TTGATCTGAATCAA
Locus tag: Dd703_1939
Dd703_1939 -159 5 TTGATCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -203
Score: 3.3
Sequence: GTGATGTGGAACAG
Locus tag: Dd703_2069
Dd703_2069 -203 3.3 GTGATGTGGAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: 0
Score: 3.7
Sequence: ATGAAAATCATCAA
Locus tag: Dd703_2219
Dd703_2219 0 3.7 ATGAAAATCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citD
Ortholog function: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)
Citrobacter koseri ATCC BAA-895 CKO_02542 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3374 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2573 -93 3.8 TTGAGCCAAATAAA
Escherichia coli str. K-12 substr. MG1655 b0617 -179 4.1 GTGAAATAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00035 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0059 -227 4.2 TTGATGGGTAACAA
Salmonella typhimurium LT2 STM0623 -182 4.1 GTGAAATAAATCAA
Position: -290
Score: 4.2
Sequence: TTGTTATAAAACAG
Position: -75
Score: 4.2
Sequence: ATGATCCATGTCAA
Locus tag: Dd703_2242
Dd703_2242 -290 4.2 TTGTTATAAAACAG
-75 4.2 ATGATCCATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -155
Score: 3.9
Sequence: TTGATTGTCATCCA
Position: 0
Score: 3.7
Sequence: ATGAACAATGTCAA
Locus tag: Dd703_2255
Dd703_2255 -155 3.9 TTGATTGTCATCCA
0 3.7 ATGAACAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -179
Score: 4.9
Sequence: TTGATATTAAACAA
Locus tag: Dd703_2256
Dd703_2256 -179 4.9 TTGATATTAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_01581 -114 3.7 TTGACATGGATTAA
Escherichia coli str. K-12 substr. MG1655 b1587 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM1499 -116 3.7 TTGACATGGATTAA
Serratia proteamaculans 568 Spro_1687 -164 4.2 TTGATAGCAGACAA
-40 4.2 ATGACGTTTATCAA
Position: 9
Score: 3.9
Sequence: CTGACGCATATCAA
Locus tag: Dd703_2433
Dd703_2433 9 3.9 CTGACGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaC
Ortholog function: Molybdenum cofactor biosynthesis protein MoaC
Citrobacter koseri ATCC BAA-895 CKO_02343 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2346 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1275 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1220 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2815 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0783 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00812 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1500 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0804 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1322 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3021 -222 3.7 GTGATGATCAACAA
Position: -265
Score: 3.6
Sequence: ATGATATAGCGCAA
Locus tag: Dd703_2435
Dd703_2435 -265 3.6 ATGATATAGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -244
Score: 3.7
Sequence: TTGCGCTATATCAT
Locus tag: Dd703_2436
Dd703_2436 -244 3.7 TTGCGCTATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -167
Score: 3.8
Sequence: ATGTTTAAAATAAA
Locus tag: Dd703_2550
Dd703_2550 -167 3.8 ATGTTTAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -91
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: Dd703_2559
Dd703_2559 -91 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -202
Score: 4.6
Sequence: TTGATGTGAAACAA
Position: -149
Score: 5.5
Sequence: TTGATTTAAATCAA
Locus tag: Dd703_2795
Dd703_2795 -202 4.6 TTGATGTGAAACAA
-149 5.5 TTGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -237
Score: 5.5
Sequence: TTGATTTAAATCAA
Position: -184
Score: 4.7
Sequence: TTGTTTCACATCAA
Locus tag: Dd703_2796
Dd703_2796 -237 5.5 TTGATTTAAATCAA
-184 4.7 TTGTTTCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -228
Score: 3.9
Sequence: TTGAGTGATATCAC
Locus tag: Dd703_3385
Dd703_3385 -228 3.9 TTGAGTGATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Citrobacter koseri ATCC BAA-895 CKO_04494 -43 3.8 TTGATCCAACTCAC
Enterobacter sp. 638 Ent638_3546 -105 4.2 TTGATCTAACTCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -225 3.9 TTGAGTGATATCAC
Escherichia coli str. K-12 substr. MG1655 b3092 -106 4.2 TTGATCTAACTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -125 4.2 TTGATCTAACTCAC
Position: -193
Score: 4.3
Sequence: TTGCGCTATATCAA
Locus tag: Dd703_3580
Dd703_3580 -193 4.3 TTGCGCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -129
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: Dd703_3812
Dd703_3812 -129 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -140
Score: 4.4
Sequence: TTGATTTTCATTAA
Position: -103
Score: 3.7
Sequence: ATGACGTAAATTAA
Locus tag: Dd703_3930
Dd703_3930 -140 4.4 TTGATTTTCATTAA
-103 3.7 ATGACGTAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0048 -140 4 TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655 b3493 -116 3.8 TTGAGTGAAATCCA
Salmonella typhimurium LT2 STM3589 -116 4.2 GTGATATCAAACAA
Yersinia pestis KIM y3862 -201 4.1 TTGAATAAAATCAT
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