Propagation of Fnr regulog to Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

Reference regulog properties
Source regulog:	Fnr - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Energy metabolism; Anaerobic metabolism
Effector:	Oxygen
Phylum:	Gammaproteobacteria
Propagated regulon:
Target genome	Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Orthologous TF(s)	No orthologous TFs found
Regulated genes	32

Built upon 685 sites [see more]

Predicted regulatory interactions in *Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)*
	Locus tag	Position	Score	Sequence
Position: 16 Score: 4.2 Sequence: CTGATCCTAATCAA Locus tag: HDEF_0067
	HDEF_0067	16	4.2	CTGATCCTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoD
Ortholog function: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895	CKO_02732	-267	3.7	TTGTTGATAATTAA
Erwinia amylovora ATCC 49946	EAM_0982	-207	3.7	GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655	b0429	-241	3.7	TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00391	-49	3.7	TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3878	-336	3.8	TTGTGAGCTATCAA
Proteus mirabilis HI4320	PMI0105A	9	3.6	ATGAAATACATAAA
Salmonella typhimurium LT2	STM0440	-268	3.4	TTTATTGATAATAA
Serratia proteamaculans 568	Spro_1087	-293	3.6	TTCTTTTACATTAA

Position: 31 Score: 4.1 Sequence: ATGATAAAGATCAT Locus tag: HDEF_0272
	HDEF_0272	31	4.1	ATGATAAAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoB
Ortholog function: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895	CKO_00509	-198	4	TCGATGTAAATTAA
Edwardsiella tarda EIB202	ETAE_2384	-292	3.7	TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655	b2287	-433	3.7	ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02677	-392	3.6	TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1	plu3088	-207	3.8	TTGTTATTTGTAAA
Salmonella typhimurium LT2	STM2327	-199	4.6	TTGATGTAAATTAA
Serratia proteamaculans 568	Spro_3307	-280	3.8	TTTCTACACATCAA
Yersinia pestis KIM	y1631	-465	3.6	TTTTATTAAAACAA

Position: -178 Score: 4.3 Sequence: ATGACCTAAAACAA Position: 10 Score: 4 Sequence: CCGATTTACAACAA Locus tag: HDEF_1307
	HDEF_1307	-178	4.3	ATGACCTAAAACAA
		10	4	CCGATTTACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnA
Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Enterobacter sp. 638	Ent638_2192	-135	4.6	TTGTTTTATCTCAA
Erwinia amylovora ATCC 49946	EAM_1866	37	4.4	TGGATGTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1941	-98	3.7	ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655	b1276	-133	3.7	TTGCTTTGCCACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2432	7	4.6	TTGATTTAAAAAAA
Salmonella typhimurium LT2	STM1712	-301	3.9	TTGATTAAACACAG
Yersinia pestis KIM	y2063	-37	3.9	TTGAATTAAAACAC

Position: -73 Score: 3.7 Sequence: GTGATTGAGATAAA Position: -69 Score: 3.8 Sequence: TTGAGATAAAATAA Position: -43 Score: 3.2 Sequence: GTGATAATAAAAAA Position: -25 Score: 3.6 Sequence: TTTATTTCTGTCAG Locus tag: HDEF_1632
	HDEF_1632	-73	3.7	GTGATTGAGATAAA
		-69	3.8	TTGAGATAAAATAA
		-43	3.2	GTGATAATAAAAAA
		-25	3.6	TTTATTTCTGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946	EAM_0260	-194	3.8	CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0626	-230	3.3	GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655	b4039	-70	3.4	TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1	plu4378	-253	3.8	TTATTTTTGGTCAA
Proteus mirabilis HI4320	PMI2753	-163	4.3	TTGTTTTTTCTCAA
Serratia proteamaculans 568	Spro_4464	-223	3.6	TTGCTGGAGATCAC
Yersinia pestis KIM	y0568	-253	3.3	CTGATATTTATAAT

Position: -110 Score: 3.7 Sequence: TTTATTAAAAAAAA Locus tag: HDEF_1876
	HDEF_1876	-110	3.7	TTTATTAAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895	CKO_04830	-204	4.1	TTGAGCCATGTCAA
Enterobacter sp. 638	Ent638_3821	-133	4.2	TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655	b3408	-203	4.4	TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03778	-198	3.8	TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0209	-206	3.5	TGGATGCAAATCAT
Proteus mirabilis HI4320	PMI2920	-190	5.2	TTGATGTACATCAA
Salmonella typhimurium LT2	STM3505	-204	4.4	TTGAGCCATATCAA
Serratia proteamaculans 568	Spro_4628	-284	3.8	CTGATTTAACTCAC
Yersinia pestis KIM	y3912	-93	4	ATTATTTAAATCAT

Position: -291 Score: 4.2 Sequence: TTGATTGGAATCAT Position: -241 Score: 3.8 Sequence: GTGTTTTATTTCAA Position: -189 Score: 3.9 Sequence: ATGATATTCATTAA Position: -32 Score: 3.7 Sequence: ATTATGAAAGTCAA Locus tag: HDEF_1882
	HDEF_1882	-291	4.2	TTGATTGGAATCAT
		-241	3.8	GTGTTTTATTTCAA
		-189	3.9	ATGATATTCATTAA
		-32	3.7	ATTATGAAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Citrate synthase (EC 2.3.3.1)
Citrobacter koseri ATCC BAA-895	CKO_02439	-67	3.8	TTGATTTATGTAAC
Enterobacter sp. 638	Ent638_1221	-147	3.6	TCGCGCTAGATCAA
Erwinia amylovora ATCC 49946	EAM_1167	-171	3.7	ATGATACTCATCAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4121	-185	4.8	TTTATCTAAATCAA
Escherichia coli str. K-12 substr. MG1655	b0720	-173	3.6	TTATTCGTCATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00489	28	3.6	TTGCCGGACAACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1425	-110	3.6	TTGATGACAAAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3138	-56	3.8	CCTATTTAAATCAA
Salmonella typhimurium LT2	STM0730	-213	3.9	TCGAAATTAATCAA

Position: -205 Score: 3.7 Sequence: TTAATGAATATCAT Position: -153 Score: 3.8 Sequence: TTGAAATAAAACAC Position: -103 Score: 4.4 Sequence: ATGATTCCAATCAA Locus tag: HDEF_1883
	HDEF_1883	-205	3.7	TTAATGAATATCAT
		-153	3.8	TTGAAATAAAACAC
		-103	4.4	ATGATTCCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895	CKO_02438	25	3.6	ATGTGAAAAAACAA
Edwardsiella tarda EIB202	ETAE_2588	10	4
Escherichia coli str. K-12 substr. MG1655	b0721	10	3.6	ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00728	-104	3.6	ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1426	-127	4	TTGTGAAAAAACAA
Proteus mirabilis HI4320	PMI0565	-2	4	TTGTGAAAAAACAA
Salmonella typhimurium LT2	STM0732	10	3.6	ATGTGAAAAAACAA
Serratia proteamaculans 568	Spro_1263	-249	4.1	GTGATCTAAATCAC
Yersinia pestis KIM	y3071	-224	3.8	ATGTTATCAATCAG

Position: -98 Score: 3.6 Sequence: CTCATTTTTAACAA Position: -45 Score: 4 Sequence: TTGATCTTTGTAAA Locus tag: HDEF_2255
	HDEF_2255	-98	3.6	CTCATTTTTAACAA
		-45	4	TTGATCTTTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstC
Ortholog function: Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Citrobacter koseri ATCC BAA-895	CKO_00064	-243	4.4	CTGTTTTTAATCAA
Edwardsiella tarda EIB202	ETAE_3539	-93	3.8	TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4476	-52	3.6	CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655	b3727	-138	3.8	CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1	plu0215	-33	3.9	TTGTTGATTCTCAA
Proteus mirabilis HI4320	PMI2894	-46	4	TTGATAGATGTCGA

Position: -3 Score: 3.5 Sequence: TTCATGAACAGCAA Locus tag: HDEF_2304
	HDEF_2304	-3	3.5	TTCATGAACAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202	ETAE_2050	-73	3.9	TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2439	-158	3.7	GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655	b1136	-89	3.6	TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2801	-249	4.8	TTGTTAAATATCAA
Serratia proteamaculans 568	Spro_2025	-3	4.3	TTGATGGAAAGCAA
Yersinia pestis KIM	y1802	-106	3.7	GTGATTTTTAACAG

Position: -15 Score: 4.5 Sequence: TTGAGGAAAATCAA Locus tag: HDEF_2336
	HDEF_2336	-15	4.5	TTGAGGAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpG
Ortholog function: ATP synthase gamma chain (EC 3.6.3.14)
Enterobacter sp. 638	Ent638_4131	-292	3.7	TTGATTAATATGAC
Erwinia amylovora ATCC 49946	EAM_3475	-124	3.9	TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4513	-191	3.7	ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655	b3733	-123	4.2	TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04138	-122	4.2	TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0041	-225	3.9	ATTATTAAAAACAA
Proteus mirabilis HI4320	PMI3063	-130	4
Salmonella typhimurium LT2	STM3866	-122	4.2	TTGTTTGAAATCAC

Position: -51 Score: 3.9 Sequence: TTGCTTTCTATAAA Locus tag: HDEF_2341
	HDEF_2341	-51	3.9	TTGCTTTCTATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895	CKO_00078	-122	4.2	TTGTTTGAAATCAC
Enterobacter sp. 638	Ent638_4126	-292	3.7	TTGATTAATATGAC
Erwinia amylovora ATCC 49946	EAM_3480	-124	3.9	TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4518	-191	3.7	ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655	b3738	-123	4.2	TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04143	-122	4.2	TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0046	-225	3.9	ATTATTAAAAACAA
Proteus mirabilis HI4320	PMI3058	-130	4
Salmonella typhimurium LT2	STM3871	-122	4.2	TTGTTTGAAATCAC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Fnr regulog to Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --