Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus coahuilensis m4-4

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus coahuilensis m4-4
Orthologous TF(s) Bcoam_010100008645
Regulated genes 32
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus coahuilensis m4-4
Locus tag Position Score Sequence
Position: -174
Score: 4.1
Sequence: AGTTGATAGAAAATT
Position: -165
Score: 4.4
Sequence: AAAATTTAGAAAATA
Locus tag: Bcoam_010100004170
Bcoam_010100004170 -174 4.1 AGTTGATAGAAAATT
-165 4.4 AAAATTTAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutP
Ortholog function: Hut operon positive regulatory protein
Bacillus subtilis subsp. subtilis str. 168 BSU39340 -25 4.1 AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42 RBAM_036400 -36 4.5 AGTTATCAGAATATT
Bacillus cereus ATCC 14579 BC3653 -36 4.8 AATATTCAAATAATT
Position: -106
Score: 4.1
Sequence: AATTGTTTAAATTTT
Position: -96
Score: 4.5
Sequence: ATTTTTAAGAAAAAT
Locus tag: Bcoam_010100005545
Bcoam_010100005545 -106 4.1 AATTGTTTAAATTTT
-96 4.5 ATTTTTAAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -94
Score: 4.4
Sequence: AATTGTCGGAAAAAT
Locus tag: Bcoam_010100005970
Bcoam_010100005970 -94 4.4 AATTGTCGGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus pumilus SAFR-032 BPUM_1071 -38 4.4 AATATACAGAAAAGT
Anoxybacillus flavithermus WK1 Aflv_2132 -102 4.6 AAATGTTAGAAAATT
Bacillus cereus ATCC 14579 BC1180 -65 4.4 TATTTTAAAAAAATA
Position: -93
Score: 4.4
Sequence: AAATGTTTAAAAATT
Locus tag: Bcoam_010100012240
Bcoam_010100012240 -93 4.4 AAATGTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjP
Ortholog function: Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6)
Anoxybacillus flavithermus WK1 Aflv_0983 -117 4.6 TATTTTCTGAATTTT
-108 4.4 AATTTTTTAATAAAT
Bacillus cereus ATCC 14579 BC4133 -90 4.3 TTTTATCTGAAAATA
Position: -95
Score: 4.5
Sequence: TTTTTTTTAAAAATT
Locus tag: Bcoam_010100013057
Bcoam_010100013057 -95 4.5 TTTTTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spo0A
Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A)
Bacillus pumilus SAFR-032 BPUM_2154 -111 4.4 ATTATTCGGAAAATT
Anoxybacillus flavithermus WK1 Aflv_0953 -120 4.6 TATTTTATGAAAAAT
Geobacillus kaustophilus HTA426 GK2387 -96 4.7 TATTTTTTGAAAAAT
Bacillus cereus ATCC 14579 BC4170 -84 4.7 AATTTTCACACAATT
Bacillus halodurans C-125 BH2773 -89 5 AATTTTTTTAAAATT
Position: -32
Score: 4.4
Sequence: AATTTTTCGAAAAAT
Locus tag: Bcoam_010100015091
Bcoam_010100015091 -32 4.4 AATTTTTCGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfA
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Anoxybacillus flavithermus WK1 Aflv_0564 -56 4.8 AAATTTCAGAAAATA
Bacillus cereus ATCC 14579 BC4526 -277 4.4 AAAAGTCAGAATATT
Oceanobacillus iheyensis HTE831 OB2122 -67 4.4 AAAATTCAAAAAATA
Position: -216
Score: 4.2
Sequence: AATTGTCTATAAAAT
Locus tag: Bcoam_010100015616
Bcoam_010100015616 -216 4.2 AATTGTCTATAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -182 4 atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42 RBAM_026400 -172 4.6 ATTTATCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2579 -206 4.7 ATTATTCAGAAAATA
Bacillus licheniformis DSM 13 BLi03086 -194 4.8 TATATTCAGAAAATA
Position: -81
Score: 4.5
Sequence: AATAATTTGATAATT
Locus tag: Bcoam_010100016795
Bcoam_010100016795 -81 4.5 AATAATTTGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiC
Ortholog function: Cell wall-binding protein
Geobacillus kaustophilus HTA426 GK2949 -54 4.4 TTTTTACAGAAAATT
Position: -155
Score: 5
Sequence: TATTTTTAGAAAATT
Locus tag: Bcoam_010100019397
Bcoam_010100019397 -155 5 TATTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42 RBAM_029920 -132 4.5 AAATTTAAAAAAATT
Bacillus licheniformis DSM 13 BLi03466 -132 4.4 AAAATTCAGAAATTT
Bacillus cereus ATCC 14579 BC5004 -141 4.5 TTATTTCAGAAAATT
Bacillus halodurans C-125 BH3488 -134 4.8 AATTTTCAGAAAATC
Position: -60
Score: 4.8
Sequence: AATAATCAGAATATT
Locus tag: Bcoam_010100019567
Bcoam_010100019567 -60 4.8 AATAATCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13 BLi03425 -56 5 AATTATTAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2428 -166 4.5 ATTTTTTAAAATATT
Bacillus cereus ATCC 14579 BC4071 -70 4.5 AATTTATTGATAATT
Bacillus halodurans C-125 BH3439 -240 4.5 AATTTTCGAAAAATA
-62 5 AATTTTCTGAATATA
Bacillus clausii KSM-K16 ABC1961 -101 4.6 TTTTTTCAGAAAATA