Propagation of CodY regulog to Bacillus coahuilensis m4-4
| Source regulog: | CodY - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus coahuilensis m4-4 |
| Orthologous TF(s) | Bcoam_010100008645 |
| Regulated genes | 32 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -174
Score: 4.1 Sequence: AGTTGATAGAAAATT
Position: -165
Score: 4.4 Sequence: AAAATTTAGAAAATA
Locus tag: Bcoam_010100004170
|
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| Bcoam_010100004170 | -174 | 4.1 | AGTTGATAGAAAATT | |
| -165 | 4.4 | AAAATTTAGAAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutP | ||||
| Ortholog function: Hut operon positive regulatory protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU39340 | -25 | 4.1 | AGTTATCAGAATTTT |
| Bacillus amyloliquefaciens FZB42 | RBAM_036400 | -36 | 4.5 | AGTTATCAGAATATT |
| Bacillus cereus ATCC 14579 | BC3653 | -36 | 4.8 | AATATTCAAATAATT |
|
Position: -106
Score: 4.1 Sequence: AATTGTTTAAATTTT
Position: -96
Score: 4.5 Sequence: ATTTTTAAGAAAAAT
Locus tag: Bcoam_010100005545
|
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| Bcoam_010100005545 | -106 | 4.1 | AATTGTTTAAATTTT | |
| -96 | 4.5 | ATTTTTAAGAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: comK | ||||
| Ortholog function: Competence transcription factor | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU10420 | -225 | 4.5 | AATTTTTAGACAACT |
| Bacillus amyloliquefaciens FZB42 | RBAM_010600 | -88 | 4.2 | TATATTCAAAAAAAA |
| Bacillus pumilus SAFR-032 | BPUM_0978 | -222 | 5 | AATTTTTAGACAATT |
| Bacillus licheniformis DSM 13 | BLi01119 | -205 | 5.3 | AATTTTTAGAAAATT |
| Oceanobacillus iheyensis HTE831 | OB1177 | -94 | 4.5 | TTTATTCTAAAAATT |
|
Position: -94
Score: 4.4 Sequence: AATTGTCGGAAAAAT
Locus tag: Bcoam_010100005970
|
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| Bcoam_010100005970 | -94 | 4.4 | AATTGTCGGAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppB | ||||
| Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | ||||
| Bacillus pumilus SAFR-032 | BPUM_1071 | -38 | 4.4 | AATATACAGAAAAGT |
| Anoxybacillus flavithermus WK1 | Aflv_2132 | -102 | 4.6 | AAATGTTAGAAAATT |
| Bacillus cereus ATCC 14579 | BC1180 | -65 | 4.4 | TATTTTAAAAAAATA |
|
Position: -93
Score: 4.4 Sequence: AAATGTTTAAAAATT
Locus tag: Bcoam_010100012240
|
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| Bcoam_010100012240 | -93 | 4.4 | AAATGTTTAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqjP | ||||
| Ortholog function: Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0983 | -117 | 4.6 | TATTTTCTGAATTTT |
| -108 | 4.4 | AATTTTTTAATAAAT | ||
| Bacillus cereus ATCC 14579 | BC4133 | -90 | 4.3 | TTTTATCTGAAAATA |
|
Position: -95
Score: 4.5 Sequence: TTTTTTTTAAAAATT
Locus tag: Bcoam_010100013057
|
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| Bcoam_010100013057 | -95 | 4.5 | TTTTTTTTAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spo0A | ||||
| Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A) | ||||
| Bacillus pumilus SAFR-032 | BPUM_2154 | -111 | 4.4 | ATTATTCGGAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_0953 | -120 | 4.6 | TATTTTATGAAAAAT |
| Geobacillus kaustophilus HTA426 | GK2387 | -96 | 4.7 | TATTTTTTGAAAAAT |
| Bacillus cereus ATCC 14579 | BC4170 | -84 | 4.7 | AATTTTCACACAATT |
| Bacillus halodurans C-125 | BH2773 | -89 | 5 | AATTTTTTTAAAATT |
|
Position: -32
Score: 4.4 Sequence: AATTTTTCGAAAAAT
Locus tag: Bcoam_010100015091
|
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| Bcoam_010100015091 | -32 | 4.4 | AATTTTTCGAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lcfA | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0564 | -56 | 4.8 | AAATTTCAGAAAATA |
| Bacillus cereus ATCC 14579 | BC4526 | -277 | 4.4 | AAAAGTCAGAATATT |
| Oceanobacillus iheyensis HTE831 | OB2122 | -67 | 4.4 | AAAATTCAAAAAATA |
|
Position: -216
Score: 4.2 Sequence: AATTGTCTATAAAAT
Locus tag: Bcoam_010100015616
|
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| Bcoam_010100015616 | -216 | 4.2 | AATTGTCTATAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU29470 | -182 | 4 | atgTgTCtGAaAata |
| Bacillus amyloliquefaciens FZB42 | RBAM_026400 | -172 | 4.6 | ATTTATCAGAAAATA |
| Bacillus pumilus SAFR-032 | BPUM_2579 | -206 | 4.7 | ATTATTCAGAAAATA |
| Bacillus licheniformis DSM 13 | BLi03086 | -194 | 4.8 | TATATTCAGAAAATA |
|
Position: -81
Score: 4.5 Sequence: AATAATTTGATAATT
Locus tag: Bcoam_010100016795
|
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| Bcoam_010100016795 | -81 | 4.5 | AATAATTTGATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yuiC | ||||
| Ortholog function: Cell wall-binding protein | ||||
| Geobacillus kaustophilus HTA426 | GK2949 | -54 | 4.4 | TTTTTACAGAAAATT |
|
Position: -155
Score: 5 Sequence: TATTTTTAGAAAATT
Locus tag: Bcoam_010100019397
|
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| Bcoam_010100019397 | -155 | 5 | TATTTTTAGAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadN | ||||
| Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_029920 | -132 | 4.5 | AAATTTAAAAAAATT |
| Bacillus licheniformis DSM 13 | BLi03466 | -132 | 4.4 | AAAATTCAGAAATTT |
| Bacillus cereus ATCC 14579 | BC5004 | -141 | 4.5 | TTATTTCAGAAAATT |
| Bacillus halodurans C-125 | BH3488 | -134 | 4.8 | AATTTTCAGAAAATC |
|
Position: -60
Score: 4.8 Sequence: AATAATCAGAATATT
Locus tag: Bcoam_010100019567
|
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| Bcoam_010100019567 | -60 | 4.8 | AATAATCAGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH3439 | ||||
| Ortholog function: Sodium/proline symporter | ||||
| Bacillus licheniformis DSM 13 | BLi03425 | -56 | 5 | AATTATTAGAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2428 | -166 | 4.5 | ATTTTTTAAAATATT |
| Bacillus cereus ATCC 14579 | BC4071 | -70 | 4.5 | AATTTATTGATAATT |
| Bacillus halodurans C-125 | BH3439 | -240 | 4.5 | AATTTTCGAAAAATA |
| -62 | 5 | AATTTTCTGAATATA | ||
| Bacillus clausii KSM-K16 | ABC1961 | -101 | 4.6 | TTTTTTCAGAAAATA |