Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus coahuilensis m4-4

Type Regulator Effector Pathway Genes Sites
TF BglZ Beta-glucoside Beta-glucosides utilization 1 1
TF BirA Biotin Biotin biosynthesis 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 18 23
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 32 55
TF CsoR Copper ion, (Cu+) Copper resistance 1 1
TF CssR CssS, sensor histidine kinase Protein secretion stress response 1 1
TF CtsR Heat shock Heat shock response 1 1
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 1 1
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 6
TF FapR Malonyl-CoA Fatty acid biosynthesis 3 4
TF Fnr Oxygen Anaerobic metabolism 2 4
TF Fur Iron ion, (Fe2+) Iron homeostasis 6 15
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 1 2
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 2 2
TF LexA DNA damage SOS response 10 12
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF MhqR 2-Methylhydroquinone and catechol resistance 2 3
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 1 1
TF NiaR Niacin NAD biosynthesis 1 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 4 9
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 2 2
TF Rex NADH Energy metabolism 4 5
TF SinR SinI, antirepressor protein Biofilm formation 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 15 27
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF YodB/CatR Diamide; Quinone Oxidative stress response 1 2
TF YrkD Multidrug resistance 2 2
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2