Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus coagulans 36D1

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus coagulans 36D1
Orthologous TF(s) BcoaDRAFT_0051
Regulated genes 24
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus coagulans 36D1
Locus tag Position Score Sequence
Position: -164
Score: 4.5
Sequence: AATTGTCAAAAAAGT
Locus tag: BcoaDRAFT_1580
BcoaDRAFT_1580 -164 4.5 AATTGTCAAAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU21870 -64 4.5 AATAAACTGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_020010 -56 4.5 AATAAACTGAAAATT
Bacillus pumilus SAFR-032 BPUM_1922 -83 4.5 AATAAACAGAAAATT
Bacillus licheniformis DSM 13 BLi02324 -51 4.8 AATATTCAGAATATA
Bacillus halodurans C-125 BH3062 -217 4.3 AATAGTCAAATTATT
-111 4.5 TATTTTTTGACTATT
Position: -74
Score: 4.5
Sequence: AATTGATTGAAAATT
Locus tag: BcoaDRAFT_0225
BcoaDRAFT_0225 -74 4.5 AATTGATTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amyS
Ortholog function: Cytoplasmic alpha-amylase (EC 3.2.1.1)
Bacillus licheniformis DSM 13 BLi00656 -57 4.7 AAAATTCTGAATATT
Bacillus cereus ATCC 14579 BC3482 -60 4.5 AATATTATAATAATT
Position: -33
Score: 4.3
Sequence: AATTATGAGAAAAAT
Locus tag: BcoaDRAFT_2102
BcoaDRAFT_2102 -33 4.3 AATTATGAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -86
Score: 4.3
Sequence: ATTTATAAAAAAATT
Locus tag: BcoaDRAFT_1922
BcoaDRAFT_1922 -86 4.3 ATTTATAAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gldA
Ortholog function: Glycerol dehydrogenase (EC 1.1.1.6)
Bacillus amyloliquefaciens FZB42 RBAM_002680 -55 4.5 TATTTTCTGACAAGT
Oceanobacillus iheyensis HTE831 OB3328 -264 4.4 AATAGTATGATAATT
Position: -285
Score: 4.4
Sequence: AATTATATGAAATTT
Position: -59
Score: 4.4
Sequence: ATTTTTCAGTTAATT
Locus tag: BcoaDRAFT_0347
BcoaDRAFT_0347 -285 4.4 AATTATATGAAATTT
-59 4.4 ATTTTTCAGTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: POT family proton (H+)-dependent oligopeptide transporter
Bacillus pumilus SAFR-032 BPUM_0343 -187 4.5 AATTTTAAATAAATT
Geobacillus kaustophilus HTA426 GK2020 -118 4.4 TTTTTTCTTAATATT
-68 4.4 ATTTTTTTGACAATA
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