Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. PCC 8801

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 8801
Orthologous TF(s) PCC8801_2058
Regulated genes 30
Built upon 228 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 8801
Locus tag Position Score Sequence
Position: -257
Score: 4.4
Sequence: TGTAATCGAGGCTACA
Locus tag: PCC8801_0154
PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
Position: -148
Score: 3.8
Sequence: TTTATTATTTGTTACC
Locus tag: PCC8801_0567
PCC8801_0567 -148 3.8 TTTATTATTTGTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Cyanothece sp. PCC 8801 PCC8801_0567 -148 3.8 TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843 MAE_22930 -141 3.8 AGTTATTTTAAATACT
Position: -251
Score: 4
Sequence: TGTATACCATGATACG
Locus tag: PCC8801_0807
PCC8801_0807 -251 4 TGTATACCATGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: apcF
Ortholog function: phycobilisome core component
Cyanothece sp. ATCC 51142 cce_1944 -177 3.8 TGTGATAAGAAATACA
Cyanothece sp. PCC 8801 PCC8801_0807 -251 4 TGTATACCATGATACG
Cyanothece sp. PCC 7425 Cyan7425_1838 -281 4.9 TGTATCATGAGTTACA
Nostoc sp. PCC 7120 all2327 -233 4.8 TGTAGTCTTTGTTACA
Synechococcus elongatus PCC 7942 Synpcc7942_2158 -214 4.8 TGTAACAGCTGATACA
Position: -92
Score: 4
Sequence: CGTATCATGGTATACA
Locus tag: PCC8801_0808
PCC8801_0808 -92 4 CGTATCATGGTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -264
Score: 5
Sequence: TGTATTTTTTGATACA
Position: -229
Score: 4.1
Sequence: AGTAATAAAAAAAACA
Locus tag: PCC8801_1229
PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: 14
Score: 3.6
Sequence: AGTGGCTAAAGATACG
Locus tag: PCC8801_1603
PCC8801_1603 14 3.6 AGTGGCTAAAGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120 alr1525 -32 3.6 AGTAAAAAGAGTGACA
Position: 11
Score: 3.7
Sequence: TGTACCTCAAGATAAA
Locus tag: PCC8801_2058
PCC8801_2058 11 3.7 TGTACCTCAAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -53
Score: 4.8
Sequence: TGTAATATTAATTACA
Locus tag: PCC8801_2066
PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -80
Score: 4.7
Sequence: TGTATCAAATTCTACT
Locus tag: PCC8801_2329
PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -94
Score: 4.9
Sequence: TGTATAAATTGCTACA
Locus tag: PCC8801_2371
PCC8801_2371 -94 4.9 TGTATAAATTGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Synechocystis sp. PCC 6803 ssl1911 -89 5 TGTATAAAATGTTACA
Cyanothece sp. PCC 8801 PCC8801_2371 -94 4.9 TGTATAAATTGCTACA
Position: -75
Score: 4.6
Sequence: TGTTACAATTAATACA
Locus tag: PCC8801_2468
PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -198
Score: 4.8
Sequence: TGTAATCATAGTTACA
Locus tag: PCC8801_3053
PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -95
Score: 4.6
Sequence: TGTATTGGTTGTTACA
Locus tag: PCC8801_3101
PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
Synechocystis sp. PCC 6803 ssr1562 -78 4.5 TGTAATCGATAATACA
Cyanothece sp. ATCC 51142 cce_0537 -137 4 TGTAAACTATGATATA
-93 4.8 TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801 PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843 MAE_39690 -99 4.3 TGTAATCGTCGATACA
Position: -127
Score: 4.3
Sequence: TGTAACAACAATAACA
Locus tag: PCC8801_3212
PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142 cce_1063 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3369 -188 4.3 AGTATCAAAAATAACA
Position: -59
Score: 4.4
Sequence: AGTAGTTATTGCTACT
Locus tag: PCC8801_3216
PCC8801_3216 -59 4.4 AGTAGTTATTGCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psbA3
Ortholog function: Photosystem II D1 protein
Cyanothece sp. ATCC 51142 cce_0267 -58 4.4 GGTAATCATTGATACA
Cyanothece sp. PCC 8801 PCC8801_3216 -59 4.4 AGTAGTTATTGCTACT
Position: -76
Score: 4.5
Sequence: CGTAGCAGATGTTACA
Locus tag: PCC8801_3375
PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -117
Score: 4.6
Sequence: TGTAACCATAGCTACT
Locus tag: PCC8801_3485
PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803 slr0851 -72 4.1 TGTAACAACCATTACC
Cyanothece sp. ATCC 51142 cce_0624 -47 4.7 TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801 PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
-92 3.8 CGTAATTGGTTTTACA
Position: -165
Score: 5.1
Sequence: TGTAACTTTAGATACA
Locus tag: PCC8801_3848
PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Position: -265
Score: 3.5
Sequence: AGTAACCATAATTATT
Position: -155
Score: 3.2
Sequence: AGTAGCAGACGAATCA
Position: -63
Score: 3.1
Sequence: TCAATAATTTGTAACA
Locus tag: PCC8801_3918
PCC8801_3918 -265 3.5 AGTAACCATAATTATT
-155 3.2 AGTAGCAGACGAATCA
-63 3.1 TCAATAATTTGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -238
Score: 3.6
Sequence: CGTATTATGAGTTAGA
Position: -77
Score: 3.6
Sequence: TGTACCATAGACTAAA
Locus tag: PCC8801_4247
PCC8801_4247 -238 3.6 CGTATTATGAGTTAGA
-77 3.6 TGTACCATAGACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF
Ortholog function: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Synechocystis sp. PCC 6803 sll1732 -244 4 TGTAACAAATAACACT
Cyanothece sp. PCC 8801 PCC8801_4247 -238 3.6 CGTATTATGAGTTAGA
Nostoc sp. PCC 7120 alr4156 -260 4 TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1 null -220 3.6 GGTAACTTTTGCTATG
Position: 1
Score: 3.7
Sequence: TGTTAAGTTTTTTACT
Locus tag: PCC8801_4249
PCC8801_4249 1 3.7 TGTTAAGTTTTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Synechocystis sp. PCC 6803 sll1733 -252 4 TGTAACAATTTTTAGT
Cyanothece sp. PCC 8801 PCC8801_4249 -238 3.6 CGTATTATGAGTTAGA
Nostoc sp. PCC 7120 alr4157 -260 4 TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1 null -220 3.6 GGTAACTTTTGCTATG
Position: -184
Score: 4.6
Sequence: TGTAGCAAATAATACG
Position: -106
Score: 3.9
Sequence: AGTATTTATAGACACA
Locus tag: PCC8801_4396
PCC8801_4396 -184 4.6 TGTAGCAAATAATACG
-106 3.9 AGTATTTATAGACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -96 3.9 AGTTACAAACTATACA
Cyanothece sp. PCC 8801 PCC8801_4396 -184 4.6 TGTAGCAAATAATACG
-106 3.9 AGTATTTATAGACACA
Cyanothece sp. PCC 7425 Cyan7425_4572 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_14800 -177 4.2 TGTAACAATCTATACG
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0613 -72 3.9 TGTAACTGCCAATACC
Thermosynechococcus elongatus BP-1 tlr1350 -82 4.6 AGTAGCAAAATTTACA
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