Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rpoD gene

Properties
Regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Built upon 228 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cyanothece sp. ATCC 51142
Position: -232
Score: 4.27503
Sequence: AGTAATCAAGGCTACA
Locus tag: cce_0875
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD -232 4.3 AGTAATCAAGGCTACA cce_0875
Cyanothece sp. PCC 8801
Position: -257
Score: 4.35937
Sequence: TGTAATCGAGGCTACA
Locus tag: PCC8801_0154
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD -257 4.4 TGTAATCGAGGCTACA PCC8801_0154
Microcystis aeruginosa NIES-843
Position: -126
Score: 4.94022
Sequence: TGTAATTAAAGCTACA
Locus tag: MAE_54470
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD -126 4.9 TGTAATTAAAGCTACA MAE_54470
Synechocystis sp. PCC 6803
Position: -246
Score: 3.88403
Sequence: TGTTATCGAGGCTACA
Locus tag: slr0653
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD -246 3.9 TGTTATCGAGGCTACA slr0653
Trichodesmium erythraeum IMS101
Position: -199
Score: 3.95827
Sequence: TGTAAAATTTTGTACC
Position: -46
Score: 3.73371
Sequence: TGTAAAATAATTTATT
Locus tag: Tery_5068
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD -199 4 TGTAAAATTTTGTACC Tery_5068
-46 3.7 TGTAAAATAATTTATT
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