Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator NtcA in Cyanobacteria

Properties
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Synechococcus sp. PCC 7002
SYNPCC7002_A2208 amt1 -52 3.7 GGTTACTTCTGCTACC
SYNPCC7002_A0076 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
SYNPCC7002_A2395 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
SYNPCC7002_A2395 SYNPCC7002_A2395 -92 4.5 TGTAGTAGACGTTACA
SYNPCC7002_A1954 SYNPCC7002_A1954 -243 4.7 TGTAACAGGAGTTACA
SYNPCC7002_A0643 cynS -237 4.5 CGTATCTTTAATTACA
SYNPCC7002_A0860 cynA -221 4.1 TGTAATTGATTTAACA
SYNPCC7002_A0582 gifA -96 5 TGTATCAAATTTTACA
SYNPCC7002_A1630 glnA -125 3.5 TGTgACccAgacTACA
SYNPCC7002_A1827 nirA -111 4 CGTAGTTAACACTACA
SYNPCC7002_A0496 nrrA -75 4.1 CGTAACCACGGTTACA
SYNPCC7002_A1675 ntcA -177 3.9 TGAAGCAAAAAGTACA
SYNPCC7002_A1632 ntcB -87 3.9 TGTAACATccGgaACA
SYNPCC7002_A2101 SYNPCC7002_A2101 67 5 TGTATCATtaaATACA
SYNPCC7002_A0264 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
SYNPCC7002_A0398 urtA -127 4.1 TGTATCAAGTGTCACA
SYNPCC7002_A1443 nifJ -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803
sll0108 amt1 -189 4 AGTAGTAAATCATACA
sll0108 amt1 -18 4.4 TGTAGATTAAAGTACA
ssr1562 SYNPCC7002_A0076 -78 4.5 TGTAATCGATAATACA
slr1147 SYNPCC7002_A1954 -214 4.7 TGTAATGATAGTTACA
ssl1911 gifA -89 5 TGTATAAAATGTTACA
slr1756 glnA -98 4.3 GGTAGCGAAAAATACA
ssl0707 glnB -184 3.7 GGTACTGATTTTTACA
slr0851 ndh -72 4.1 TGTAACAACCATTACC
sll1450 nrtA -96 3.9 AGTTACAAACTATACA
slr0898 nirA -74 4.7 TGTAATTTACGTTACA
sll1330 nrrA -75 4.6 GGTAACTGTTGTTACA
slr0653 rpoD -246 3.9 TGTTATCGAGGCTACA
sll1515 gifB -119 4.2 CGTAAAAATGGATACA
slr0447 urtA -211 4.5 GGTATCCTATGCTACA
slr0009 rbcL -228 4.3 TGTAATTTAAAAAACA
sll0741 nifJ -181 3.3 AGAATCAACAAAAACA
sll1733 ndhD -252 4 TGTAACAATTTTTAGT
sll1732 ndhF -244 4 TGTAACAAATAACACT
sll1712 hanA -264 3.8 GGTAGTTTTTGAAACT
Cyanothece sp. ATCC 51142
cce_3261 amt1 -152 3.5 TGTtAaggtTGTaACA
cce_0537 SYNPCC7002_A0076 -137 4 TGTAAACTATGATATA
cce_0537 SYNPCC7002_A0076 -93 4.8 TGTAGTCTTTGTTACA
cce_4355 SYNPCC7002_A0077 -172 4.7 TGTTACAATAGCTACA
cce_2729 SYNPCC7002_A2395 -148 4 TGTAACATATGATAAC
cce_2729 SYNPCC7002_A2395 -87 4.6 TGTAATATTGATTACA
cce_3327 SYNPCC7002_A1954 -210 4.7 TGTAGTCATAGTTACA
cce_3327 SYNPCC7002_A1954 -46 4 TTTATTTTCTGTTACA
cce_3797 cce_3797 -70 4.9 TGTAGCTTAATATACA
cce_0259 gifA -95 5.2 TGTAGCAAATGTTACA
cce_4432 glnA -89 4.5 AGTATCCAATTATACA
cce_4432 glnA -30 4 TGTATATATTGAAACC
cce_1063 hupS -204 4.8 TGTAAAATTTAATACA
cce_1063 hupS -159 3.8 GGTAATAATTAATAGA
cce_0624 ndh -47 4.7 TGTAACTGTAGTTACT
cce_1223 nirA -76 4.7 TGTTACATTAGCTACA
cce_1808 nrrA -76 4.3 CGTAGCCGATGTTACA
cce_0198 ntcB -73 4.2 AGTATCAATTTCTACG
cce_3797 SYNPCC7002_A2101 -70 4.9 TGTAGCTTAATATACA
cce_0267 psbA3 -58 4.4 GGTAATCATTGATACA
cce_0875 rpoD -232 4.3 AGTAATCAAGGCTACA
cce_2638 gifB -144 5.2 TGTAACAATAGATACA
cce_1944 apcF -177 3.8 TGTGATAAGAAATACA
cce_2390 trxQ -332 3.7 AATAGCTATAATTACT
cce_3633 psbZ -20 4.2 TGTAACTGTATTAACA
cce_0953 nifJ -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801
PCC8801_1229 amt1 -264 5 TGTATTTTTTGATACA
PCC8801_1229 amt1 -229 4.1 AGTAATAAAAAAAACA
PCC8801_3101 SYNPCC7002_A0076 -95 4.6 TGTATTGGTTGTTACA
PCC8801_2066 SYNPCC7002_A2395 -53 4.8 TGTAATATTAATTACA
PCC8801_3053 SYNPCC7002_A1954 -198 4.8 TGTAATCATAGTTACA
PCC8801_3848 cce_3797 -165 5.1 TGTAACTTTAGATACA
PCC8801_2371 gifA -94 4.9 TGTATAAATTGCTACA
PCC8801_0808 glnA -92 4 CGTATCATGGTATACA
PCC8801_3212 hupS -127 4.3 TGTAACAACAATAACA
PCC8801_3485 ndh -117 4.6 TGTAACCATAGCTACT
PCC8801_3485 ndh -92 3.8 CGTAATTGGTTTTACA
PCC8801_4396 nrtA -184 4.6 TGTAGCAAATAATACG
PCC8801_4396 nrtA -106 3.9 AGTATTTATAGACACA
PCC8801_2468 nirA -75 4.6 TGTTACAATTAATACA
PCC8801_2463 narB -165 4.4 TGTATtAccaaATACA
PCC8801_3375 nrrA -76 4.5 CGTAGCAGATGTTACA
PCC8801_2329 ntcB -80 4.7 TGTATCAAATTCTACT
PCC8801_3848 SYNPCC7002_A2101 -165 5.1 TGTAACTTTAGATACA
PCC8801_3216 psbA3 -59 4.4 AGTAGTTATTGCTACT
PCC8801_0154 rpoD -257 4.4 TGTAATCGAGGCTACA
PCC8801_0807 apcF -251 4 TGTATACCATGATACG
PCC8801_0870 fur -380 3.4 TGTTTATGCTAAAACA
PCC8801_0567 coxB -148 3.8 TTTATTATTTGTTACC
PCC8801_3918 nifJ -265 3.5 AGTAACCATAATTATT
PCC8801_4247 ndhF -238 3.6 CGTATTATGAGTTAGA
Cyanothece sp. PCC 7425
Cyan7425_0782 amt1 -228 4.4 TGTATAACGTGATACA
Cyan7425_0729 SYNPCC7002_A0076 -128 4.3 TGTAACATTTGTTATT
Cyan7425_0729 SYNPCC7002_A0076 -71 4.1 AGTATTGGTGGATACA
Cyan7425_0833 SYNPCC7002_A2395 -38 3.7 AGTAGTTTAATAAACT
Cyan7425_0732 cce_3797 -33 5.2 TGTATCATAAGCTACA
Cyan7425_1839 glnA -221 4.9 TGTAACTCATGATACA
Cyan7425_4042 Cyan7425_4042 -151 4.4 AGTAGCTCGTGATACA
Cyan7425_4573 nirA -123 4.5 TGTAACTTAATATACC
Cyan7425_0851 nrrA -82 4.1 AGTAGCTAGAGTTACG
Cyan7425_0755 ntcA -173 4.8 TGTATCCGATGATACA
Cyan7425_1599 ntcB -78 4.6 TGTATCACTATCTACA
Cyan7425_0732 SYNPCC7002_A2101 -33 5.2 TGTATCATAAGCTACA
Cyan7425_1838 apcF -281 4.9 TGTATCATGAGTTACA
Cyan7425_4369 nifJ -120 3.1 TCTAACGTATTCTCCA
Cyan7425_2260 urtA -148 3.7 TGTATAATAGATCACA
Cyan7425_1393 gifB -158 4.7 GGTATCATATAATACA
Microcystis aeruginosa NIES-843
MAE_62530 icd -30 3.7 CGTATAGATAAATACT
MAE_40010 amt1 -213 4.6 TGTATCAACGAATACA
MAE_39690 SYNPCC7002_A0076 -99 4.3 TGTAATCGTCGATACA
MAE_38700 SYNPCC7002_A2395 -87 4.2 TGTAATCATCTTTACA
MAE_14410 SYNPCC7002_A1954 -75 3.7 TGTAAACTGGGAAACA
MAE_14840 cce_3797 -38 4.9 TGTAAATTTAGATACA
MAE_49490 gifA -42 4.9 TGTAAaAataGATACA
MAE_19270 glnA -92 4.7 TGTATCgaAaaATACA
MAE_09050 glnN -244 4.7 TGTAAtgTtTGATACA
MAE_18410 nirA -190 4.1 TGTTACAGACAATACA
MAE_14810 MAE_14810 -177 4.2 TGTAACAATCTATACG
MAE_53960 narB -88 4.8 TGTATTAATAACTACA
MAE_09380 ntcB -80 4.1 gGTAgCAatTtcTACc
MAE_14840 SYNPCC7002_A2101 -38 4.9 TGTAAATTTAGATACA
MAE_54470 rpoD -126 4.9 TGTAATTAAAGCTACA
MAE_18580 SYNPCC7002_A0264 -68 4.8 TGTATCTTTAGCTACT
MAE_06220 urtA -140 4.6 AGTAGCGAAAGTTACA
MAE_06180 urtE -8 3.8 GGTTGACAATGTTACA
MAE_37080 fur -118 3.7 AGTAATTTTTCATACT
MAE_22930 coxB -141 3.8 AGTTATTTTAAATACT
MAE_06220 urtA -170 4.7 AGTAGCAAAAATTACA
Nostoc sp. PCC 7120
all4968 gor -48 4.1 AATAACAACTGTTACA
alr1827 icd -6 3.4 TGAAATATGTACAACA
alr0992 amt1 -50 4.7 TGTAACTAAGTATACA
alr0990 amt1 -250 4.7 TGTATTAACTAATACA
asr0064 SYNPCC7002_A0076 -107 3.7 CGTATAGCAAAATACA
alr4308 SYNPCC7002_A2395 -64 3.9 GGTAGTCGGAGTTACA
alr3982 SYNPCC7002_A1954 -250 4.6 TGTAGTGATAGCTACA
asl2329 gifA -78 4.7 CGTAGCATAAGATACA
alr2328 glnA -142 4.8 TGTAACAAAGACTACA
all2319 glnB -214 3.8 AGTTACACAGACTACA
all1127 ndh -146 4.7 TGTAGCTTAAATTACT
all4312 nrrA -75 4.5 AGTAACAAAGACTACA
alr4392 ntcA -151 3.7 GGTATCATTATGAACA
alr4392 ntcA -111 3.7 AGTATAGGAAAGTACA
all0602 ntcB -80 4.5 TGTAACAAAATCTACC
all0602 ntcB -21 4.7 TGTAATTAAGGCTACA
all1327 SYNPCC7002_A0264 -52 4.3 CGTAGTGTATGTTACA
all2327 apcF -233 4.8 TGTAGTCTTTGTTACA
all1691 fur -218 4.1 TGTAGCTTGAGATTCA
alr1690 alr1690 -91 3.6 TGTGAATATAGAAACA
alr2514 coxB -291 3.5 AGAAGTAGAAGCTACT
all4001 isiA -37 3.7 AGTATTTCTGGCAACA
alr1524 rbcL -32 3.6 AGTAAAAAGAGTGACA
alr4344 gltS -265 3.5 TGGAAAAATTAAAACA
all1258 psbZ -161 3.4 TGTTACAAAAATTAGG
alr1911 nifJ -281 3.2 TGAATTTGATGTAACC
alr4156 ndhF -260 4 TGTCTTATAAAATACA
alr0052 trxA 17 3.7 AGTTACAGATTCTACT
asr3935 hanA -279 3.6 GGTATTTTTTCCTACT
all1951 urtA -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101
Tery_4477 amt1 -83 4.9 AGTAGCATTTGATACA
Tery_2891 SYNPCC7002_A0076 -191 4.1 TGTAATTTAGACAACA
Tery_2891 SYNPCC7002_A0076 -110 4.6 TGTAACTATATATACT
Tery_0672 SYNPCC7002_A2395 -94 4.3 AGTATTCAAAATTACA
Tery_3912 SYNPCC7002_A1954 -156 4.3 TGTAGTTATGGCTACC
Tery_3834 glnA -250 4 CGTAACACCCGATACA
Tery_3369 hupS -188 4.3 AGTATCAAAAATAACA
Tery_3368 hupL -64 4.1 TGTAGCTACTGATAAA
Tery_1068 nirA -276 3.8 TGTATTTTTATATAGT
Tery_1068 nirA -199 4.1 TGTTATATAAGCTACG
Tery_0675 nrrA -89 4.7 AGTAGCTTCTGTTACA
Tery_4333 ntcB -27 4 TGTATAAAATAACACA
Tery_5068 rpoD -199 4 TGTAAAATTTTGTACC
Tery_5068 rpoD -46 3.7 TGTAAAATAATTTATT
Tery_3029 gifB -349 3.8 TGTATCTGATGTTAGG
Tery_1958 fur -40 3.5 TGTATCATTGTCAATA
Tery_4410 rbcL -293 3.4 GATAACTATTACTACG
Tery_1667 isiA -134 3.6 AGTAATTGATCATACT
Tery_0466 gltS -228 4.2 TGTATCCTAGGCAACA
Tery_0130 urtA -390 3.8 AGTTACAAAAAAAACA
Tery_4747 gor -208 3.9 TGTAGTCGTAGATATA
Tery_4747 gor -120 4.7 TGTAACTAATTATACT
Synechococcus elongatus PCC 7942
Synpcc7942_0442 amt1 -151 4.1 TGTTACATCGATTACA
Synpcc7942_1845 cce_3797 -27 4.3 TGTATCCGTTGCTACC
Synpcc7942_2107 cynA -67 4.4 TGTAACGACGGCTACA
Synpcc7942_2156 glnA -194 4.8 TGTATCAgcTGTTACA
Synpcc7942_0321 glnB -103 4.8 TGTAGCAGTAACTACA
Synpcc7942_1240 nirA -220 4.9 TGTAGCAATTGCTACT
Synpcc7942_1240 nirA -149 4.3 AGTATCAATGATTACT
Synpcc7942_1240 nirA -80 4.4 TGTAGTTTCTGTTACC
Synpcc7942_0127 ntcA -157 4.7 AGTAGCAGTTGCTACA
Synpcc7942_1241 nirB -153 4.3 AGTAATCATTGATACT
Synpcc7942_1241 nirB -82 4.9 AGTAGCAATTGCTACA
Synpcc7942_1845 SYNPCC7002_A2101 -27 4.3 TGTATCCGTTGCTACC
Synpcc7942_2158 apcF -214 4.8 TGTAACAGCTGATACA
Prochlorococcus marinus str. MIT 9313
PMT1853 amt1 -160 3.8 TGTAACAAAATGAACT
PMT0601 glnA -79 4.2 GGTACCTGTTGCTACA
PMT2229 urtA -146 4 TGTTGCAACAGCTACC
PMT2229 urtA -95 4.7 TGTATCATTCACTACA
Synechococcus sp. JA-3-3Ab
CYA_0030 fur -66 3.6 GCTATTATCAATTACA
CYA_0570 SYNPCC7002_A2395 -139 3.9 GGTAAGATAAAATACA
CYA_0570 SYNPCC7002_A2395 -81 4.2 CGTATCAAAGGCTACT
CYA_1363 glnA -138 4.3 CGTATCAGAAACTACA
CYA_1508 glnB -74 4.5 TGTATCCGTTTTTACA
CYA_0612 nirA -72 3.9 TGTAACTGCCAATACC
CYA_1799 ntcA -181 4.7 TGTAGCTCCTGCTACA
CYA_0984 ntcB -89 4.2 TGTAACGGTGTTTACA
CYA_1920 urtE -248 3.9 AGAAACAGAAGCTACA
CYA_1924 urtA -272 3.7 GGTATCCCGCGATACA
Synechococcus sp. WH 8102
SYNW0253 amt1 -100 4.2 TGTATCAATTAACACA
SYNW0246 SYNPCC7002_A1954 -143 4.1 TGTAACTTTGGTTGCA
SYNW2487 cynA -103 4.1 TGTAGCAAGTGAGACA
SYNW2487 cynA -66 4.5 AGTATCACCTGATACA
SYNW2442 urtA -118 4 TGTTGCAACAGCTACC
Gloeobacter violaceus PCC 7421
gvip146 glnA -116 4 CGTATCTCAGACTACA
gvip212 nirA -146 4 TGTATCTGGGGTTACG
gvip454 ntcA -77 3.9 AGTAGTCCCTAATACA
gvip213 ntcB -46 4 CGTAACCCCAGATACA
glr3304 fur -116 3.9 TGTAACAAATTGTAGA
gll0880 trxA -379 3.6 TGTATCTAGAACTAGC
Thermosynechococcus elongatus BP-1
null gifB -175 4.4 TGTTAAATTAGATACA
amt1 amt1 -190 4.4 TGTATAACGTGATACA
tsr2448 SYNPCC7002_A0076 -63 4.1 AGTATTGGATATTACA
tlr1468 SYNPCC7002_A2395 -85 4.3 TGTAGTTGAGTTTACA
tlr0194 tlr0194 -111 4.2 TGTAACCTATCTTACA
tll0591 glnB -80 5.1 TGTAGCTATTGCTACA
tlr1349 nirA -82 4.6 AGTAGCAAAATTTACA
tlr1330 nrrA -138 4 AGTATTATTCGTTACG
null ntcB -122 3.9 TGTATCAATCAACACA
tlr1120 urtA -81 4 TGTAGCCTAGCATACA
tlr2286 trxQ -130 4 AGTAGCAATGACAACA
null isiA -195 3.8 AGTTTCTGGAAATACA
null ndhF -220 3.6 GGTAACTTTTGCTATG
null gifB -146 4.4 TGTTAAATTAGATACA
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