Profile of regulator NtcA in Cyanobacteria
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Regulog: | NtcA - Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - CRP
- By effector - 2-oxoglutarate
- By pathway - Nitrogen assimilation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Synechococcus sp. PCC 7002 | |||||
| SYNPCC7002_A2208 | amt1 | -52 | 3.7 | GGTTACTTCTGCTACC | |
| SYNPCC7002_A0076 | SYNPCC7002_A0076 | -97 | 4.2 | AGTATTGAAATATACA | |
| SYNPCC7002_A2395 | SYNPCC7002_A2395 | -200 | 4.5 | TGTTACTTAAATTACA | |
| SYNPCC7002_A2395 | SYNPCC7002_A2395 | -92 | 4.5 | TGTAGTAGACGTTACA | |
| SYNPCC7002_A1954 | SYNPCC7002_A1954 | -243 | 4.7 | TGTAACAGGAGTTACA | |
| SYNPCC7002_A0643 | cynS | -237 | 4.5 | CGTATCTTTAATTACA | |
| SYNPCC7002_A0860 | cynA | -221 | 4.1 | TGTAATTGATTTAACA | |
| SYNPCC7002_A0582 | gifA | -96 | 5 | TGTATCAAATTTTACA | |
| SYNPCC7002_A1630 | glnA | -125 | 3.5 | TGTgACccAgacTACA | |
| SYNPCC7002_A1827 | nirA | -111 | 4 | CGTAGTTAACACTACA | |
| SYNPCC7002_A0496 | nrrA | -75 | 4.1 | CGTAACCACGGTTACA | |
| SYNPCC7002_A1675 | ntcA | -177 | 3.9 | TGAAGCAAAAAGTACA | |
| SYNPCC7002_A1632 | ntcB | -87 | 3.9 | TGTAACATccGgaACA | |
| SYNPCC7002_A2101 | SYNPCC7002_A2101 | 67 | 5 | TGTATCATtaaATACA | |
| SYNPCC7002_A0264 | SYNPCC7002_A0264 | -29 | 5 | TGTATCAAATACTACA | |
| SYNPCC7002_A0398 | urtA | -127 | 4.1 | TGTATCAAGTGTCACA | |
| SYNPCC7002_A1443 | nifJ | -272 | 4.1 | TTTATCATTTTCTACA | |
| Synechocystis sp. PCC 6803 | |||||
| sll0108 | amt1 | -189 | 4 | AGTAGTAAATCATACA | |
| sll0108 | amt1 | -18 | 4.4 | TGTAGATTAAAGTACA | |
| ssr1562 | SYNPCC7002_A0076 | -78 | 4.5 | TGTAATCGATAATACA | |
| slr1147 | SYNPCC7002_A1954 | -214 | 4.7 | TGTAATGATAGTTACA | |
| ssl1911 | gifA | -89 | 5 | TGTATAAAATGTTACA | |
| slr1756 | glnA | -98 | 4.3 | GGTAGCGAAAAATACA | |
| ssl0707 | glnB | -184 | 3.7 | GGTACTGATTTTTACA | |
| slr0851 | ndh | -72 | 4.1 | TGTAACAACCATTACC | |
| sll1450 | nrtA | -96 | 3.9 | AGTTACAAACTATACA | |
| slr0898 | nirA | -74 | 4.7 | TGTAATTTACGTTACA | |
| sll1330 | nrrA | -75 | 4.6 | GGTAACTGTTGTTACA | |
| slr0653 | rpoD | -246 | 3.9 | TGTTATCGAGGCTACA | |
| sll1515 | gifB | -119 | 4.2 | CGTAAAAATGGATACA | |
| slr0447 | urtA | -211 | 4.5 | GGTATCCTATGCTACA | |
| slr0009 | rbcL | -228 | 4.3 | TGTAATTTAAAAAACA | |
| sll0741 | nifJ | -181 | 3.3 | AGAATCAACAAAAACA | |
| sll1733 | ndhD | -252 | 4 | TGTAACAATTTTTAGT | |
| sll1732 | ndhF | -244 | 4 | TGTAACAAATAACACT | |
| sll1712 | hanA | -264 | 3.8 | GGTAGTTTTTGAAACT | |
| Cyanothece sp. ATCC 51142 | |||||
| cce_3261 | amt1 | -152 | 3.5 | TGTtAaggtTGTaACA | |
| cce_0537 | SYNPCC7002_A0076 | -137 | 4 | TGTAAACTATGATATA | |
| cce_0537 | SYNPCC7002_A0076 | -93 | 4.8 | TGTAGTCTTTGTTACA | |
| cce_4355 | SYNPCC7002_A0077 | -172 | 4.7 | TGTTACAATAGCTACA | |
| cce_2729 | SYNPCC7002_A2395 | -148 | 4 | TGTAACATATGATAAC | |
| cce_2729 | SYNPCC7002_A2395 | -87 | 4.6 | TGTAATATTGATTACA | |
| cce_3327 | SYNPCC7002_A1954 | -210 | 4.7 | TGTAGTCATAGTTACA | |
| cce_3327 | SYNPCC7002_A1954 | -46 | 4 | TTTATTTTCTGTTACA | |
| cce_3797 | cce_3797 | -70 | 4.9 | TGTAGCTTAATATACA | |
| cce_0259 | gifA | -95 | 5.2 | TGTAGCAAATGTTACA | |
| cce_4432 | glnA | -89 | 4.5 | AGTATCCAATTATACA | |
| cce_4432 | glnA | -30 | 4 | TGTATATATTGAAACC | |
| cce_1063 | hupS | -204 | 4.8 | TGTAAAATTTAATACA | |
| cce_1063 | hupS | -159 | 3.8 | GGTAATAATTAATAGA | |
| cce_0624 | ndh | -47 | 4.7 | TGTAACTGTAGTTACT | |
| cce_1223 | nirA | -76 | 4.7 | TGTTACATTAGCTACA | |
| cce_1808 | nrrA | -76 | 4.3 | CGTAGCCGATGTTACA | |
| cce_0198 | ntcB | -73 | 4.2 | AGTATCAATTTCTACG | |
| cce_3797 | SYNPCC7002_A2101 | -70 | 4.9 | TGTAGCTTAATATACA | |
| cce_0267 | psbA3 | -58 | 4.4 | GGTAATCATTGATACA | |
| cce_0875 | rpoD | -232 | 4.3 | AGTAATCAAGGCTACA | |
| cce_2638 | gifB | -144 | 5.2 | TGTAACAATAGATACA | |
| cce_1944 | apcF | -177 | 3.8 | TGTGATAAGAAATACA | |
| cce_2390 | trxQ | -332 | 3.7 | AATAGCTATAATTACT | |
| cce_3633 | psbZ | -20 | 4.2 | TGTAACTGTATTAACA | |
| cce_0953 | nifJ | -52 | 3.8 | TGCAACAAAAATTACC | |
| Cyanothece sp. PCC 8801 | |||||
| PCC8801_1229 | amt1 | -264 | 5 | TGTATTTTTTGATACA | |
| PCC8801_1229 | amt1 | -229 | 4.1 | AGTAATAAAAAAAACA | |
| PCC8801_3101 | SYNPCC7002_A0076 | -95 | 4.6 | TGTATTGGTTGTTACA | |
| PCC8801_2066 | SYNPCC7002_A2395 | -53 | 4.8 | TGTAATATTAATTACA | |
| PCC8801_3053 | SYNPCC7002_A1954 | -198 | 4.8 | TGTAATCATAGTTACA | |
| PCC8801_3848 | cce_3797 | -165 | 5.1 | TGTAACTTTAGATACA | |
| PCC8801_2371 | gifA | -94 | 4.9 | TGTATAAATTGCTACA | |
| PCC8801_0808 | glnA | -92 | 4 | CGTATCATGGTATACA | |
| PCC8801_3212 | hupS | -127 | 4.3 | TGTAACAACAATAACA | |
| PCC8801_3485 | ndh | -117 | 4.6 | TGTAACCATAGCTACT | |
| PCC8801_3485 | ndh | -92 | 3.8 | CGTAATTGGTTTTACA | |
| PCC8801_4396 | nrtA | -184 | 4.6 | TGTAGCAAATAATACG | |
| PCC8801_4396 | nrtA | -106 | 3.9 | AGTATTTATAGACACA | |
| PCC8801_2468 | nirA | -75 | 4.6 | TGTTACAATTAATACA | |
| PCC8801_2463 | narB | -165 | 4.4 | TGTATtAccaaATACA | |
| PCC8801_3375 | nrrA | -76 | 4.5 | CGTAGCAGATGTTACA | |
| PCC8801_2329 | ntcB | -80 | 4.7 | TGTATCAAATTCTACT | |
| PCC8801_3848 | SYNPCC7002_A2101 | -165 | 5.1 | TGTAACTTTAGATACA | |
| PCC8801_3216 | psbA3 | -59 | 4.4 | AGTAGTTATTGCTACT | |
| PCC8801_0154 | rpoD | -257 | 4.4 | TGTAATCGAGGCTACA | |
| PCC8801_0807 | apcF | -251 | 4 | TGTATACCATGATACG | |
| PCC8801_0870 | fur | -380 | 3.4 | TGTTTATGCTAAAACA | |
| PCC8801_0567 | coxB | -148 | 3.8 | TTTATTATTTGTTACC | |
| PCC8801_3918 | nifJ | -265 | 3.5 | AGTAACCATAATTATT | |
| PCC8801_4247 | ndhF | -238 | 3.6 | CGTATTATGAGTTAGA | |
| Cyanothece sp. PCC 7425 | |||||
| Cyan7425_0782 | amt1 | -228 | 4.4 | TGTATAACGTGATACA | |
| Cyan7425_0729 | SYNPCC7002_A0076 | -128 | 4.3 | TGTAACATTTGTTATT | |
| Cyan7425_0729 | SYNPCC7002_A0076 | -71 | 4.1 | AGTATTGGTGGATACA | |
| Cyan7425_0833 | SYNPCC7002_A2395 | -38 | 3.7 | AGTAGTTTAATAAACT | |
| Cyan7425_0732 | cce_3797 | -33 | 5.2 | TGTATCATAAGCTACA | |
| Cyan7425_1839 | glnA | -221 | 4.9 | TGTAACTCATGATACA | |
| Cyan7425_4042 | Cyan7425_4042 | -151 | 4.4 | AGTAGCTCGTGATACA | |
| Cyan7425_4573 | nirA | -123 | 4.5 | TGTAACTTAATATACC | |
| Cyan7425_0851 | nrrA | -82 | 4.1 | AGTAGCTAGAGTTACG | |
| Cyan7425_0755 | ntcA | -173 | 4.8 | TGTATCCGATGATACA | |
| Cyan7425_1599 | ntcB | -78 | 4.6 | TGTATCACTATCTACA | |
| Cyan7425_0732 | SYNPCC7002_A2101 | -33 | 5.2 | TGTATCATAAGCTACA | |
| Cyan7425_1838 | apcF | -281 | 4.9 | TGTATCATGAGTTACA | |
| Cyan7425_4369 | nifJ | -120 | 3.1 | TCTAACGTATTCTCCA | |
| Cyan7425_2260 | urtA | -148 | 3.7 | TGTATAATAGATCACA | |
| Cyan7425_1393 | gifB | -158 | 4.7 | GGTATCATATAATACA | |
| Microcystis aeruginosa NIES-843 | |||||
| MAE_62530 | icd | -30 | 3.7 | CGTATAGATAAATACT | |
| MAE_40010 | amt1 | -213 | 4.6 | TGTATCAACGAATACA | |
| MAE_39690 | SYNPCC7002_A0076 | -99 | 4.3 | TGTAATCGTCGATACA | |
| MAE_38700 | SYNPCC7002_A2395 | -87 | 4.2 | TGTAATCATCTTTACA | |
| MAE_14410 | SYNPCC7002_A1954 | -75 | 3.7 | TGTAAACTGGGAAACA | |
| MAE_14840 | cce_3797 | -38 | 4.9 | TGTAAATTTAGATACA | |
| MAE_49490 | gifA | -42 | 4.9 | TGTAAaAataGATACA | |
| MAE_19270 | glnA | -92 | 4.7 | TGTATCgaAaaATACA | |
| MAE_09050 | glnN | -244 | 4.7 | TGTAAtgTtTGATACA | |
| MAE_18410 | nirA | -190 | 4.1 | TGTTACAGACAATACA | |
| MAE_14810 | MAE_14810 | -177 | 4.2 | TGTAACAATCTATACG | |
| MAE_53960 | narB | -88 | 4.8 | TGTATTAATAACTACA | |
| MAE_09380 | ntcB | -80 | 4.1 | gGTAgCAatTtcTACc | |
| MAE_14840 | SYNPCC7002_A2101 | -38 | 4.9 | TGTAAATTTAGATACA | |
| MAE_54470 | rpoD | -126 | 4.9 | TGTAATTAAAGCTACA | |
| MAE_18580 | SYNPCC7002_A0264 | -68 | 4.8 | TGTATCTTTAGCTACT | |
| MAE_06220 | urtA | -140 | 4.6 | AGTAGCGAAAGTTACA | |
| MAE_06180 | urtE | -8 | 3.8 | GGTTGACAATGTTACA | |
| MAE_37080 | fur | -118 | 3.7 | AGTAATTTTTCATACT | |
| MAE_22930 | coxB | -141 | 3.8 | AGTTATTTTAAATACT | |
| MAE_06220 | urtA | -170 | 4.7 | AGTAGCAAAAATTACA | |
| Nostoc sp. PCC 7120 | |||||
| all4968 | gor | -48 | 4.1 | AATAACAACTGTTACA | |
| alr1827 | icd | -6 | 3.4 | TGAAATATGTACAACA | |
| alr0992 | amt1 | -50 | 4.7 | TGTAACTAAGTATACA | |
| alr0990 | amt1 | -250 | 4.7 | TGTATTAACTAATACA | |
| asr0064 | SYNPCC7002_A0076 | -107 | 3.7 | CGTATAGCAAAATACA | |
| alr4308 | SYNPCC7002_A2395 | -64 | 3.9 | GGTAGTCGGAGTTACA | |
| alr3982 | SYNPCC7002_A1954 | -250 | 4.6 | TGTAGTGATAGCTACA | |
| asl2329 | gifA | -78 | 4.7 | CGTAGCATAAGATACA | |
| alr2328 | glnA | -142 | 4.8 | TGTAACAAAGACTACA | |
| all2319 | glnB | -214 | 3.8 | AGTTACACAGACTACA | |
| all1127 | ndh | -146 | 4.7 | TGTAGCTTAAATTACT | |
| all4312 | nrrA | -75 | 4.5 | AGTAACAAAGACTACA | |
| alr4392 | ntcA | -151 | 3.7 | GGTATCATTATGAACA | |
| alr4392 | ntcA | -111 | 3.7 | AGTATAGGAAAGTACA | |
| all0602 | ntcB | -80 | 4.5 | TGTAACAAAATCTACC | |
| all0602 | ntcB | -21 | 4.7 | TGTAATTAAGGCTACA | |
| all1327 | SYNPCC7002_A0264 | -52 | 4.3 | CGTAGTGTATGTTACA | |
| all2327 | apcF | -233 | 4.8 | TGTAGTCTTTGTTACA | |
| all1691 | fur | -218 | 4.1 | TGTAGCTTGAGATTCA | |
| alr1690 | alr1690 | -91 | 3.6 | TGTGAATATAGAAACA | |
| alr2514 | coxB | -291 | 3.5 | AGAAGTAGAAGCTACT | |
| all4001 | isiA | -37 | 3.7 | AGTATTTCTGGCAACA | |
| alr1524 | rbcL | -32 | 3.6 | AGTAAAAAGAGTGACA | |
| alr4344 | gltS | -265 | 3.5 | TGGAAAAATTAAAACA | |
| all1258 | psbZ | -161 | 3.4 | TGTTACAAAAATTAGG | |
| alr1911 | nifJ | -281 | 3.2 | TGAATTTGATGTAACC | |
| alr4156 | ndhF | -260 | 4 | TGTCTTATAAAATACA | |
| alr0052 | trxA | 17 | 3.7 | AGTTACAGATTCTACT | |
| asr3935 | hanA | -279 | 3.6 | GGTATTTTTTCCTACT | |
| all1951 | urtA | -116 | 4.3 | AGTATCAAAAATAACA | |
| Trichodesmium erythraeum IMS101 | |||||
| Tery_4477 | amt1 | -83 | 4.9 | AGTAGCATTTGATACA | |
| Tery_2891 | SYNPCC7002_A0076 | -191 | 4.1 | TGTAATTTAGACAACA | |
| Tery_2891 | SYNPCC7002_A0076 | -110 | 4.6 | TGTAACTATATATACT | |
| Tery_0672 | SYNPCC7002_A2395 | -94 | 4.3 | AGTATTCAAAATTACA | |
| Tery_3912 | SYNPCC7002_A1954 | -156 | 4.3 | TGTAGTTATGGCTACC | |
| Tery_3834 | glnA | -250 | 4 | CGTAACACCCGATACA | |
| Tery_3369 | hupS | -188 | 4.3 | AGTATCAAAAATAACA | |
| Tery_3368 | hupL | -64 | 4.1 | TGTAGCTACTGATAAA | |
| Tery_1068 | nirA | -276 | 3.8 | TGTATTTTTATATAGT | |
| Tery_1068 | nirA | -199 | 4.1 | TGTTATATAAGCTACG | |
| Tery_0675 | nrrA | -89 | 4.7 | AGTAGCTTCTGTTACA | |
| Tery_4333 | ntcB | -27 | 4 | TGTATAAAATAACACA | |
| Tery_5068 | rpoD | -199 | 4 | TGTAAAATTTTGTACC | |
| Tery_5068 | rpoD | -46 | 3.7 | TGTAAAATAATTTATT | |
| Tery_3029 | gifB | -349 | 3.8 | TGTATCTGATGTTAGG | |
| Tery_1958 | fur | -40 | 3.5 | TGTATCATTGTCAATA | |
| Tery_4410 | rbcL | -293 | 3.4 | GATAACTATTACTACG | |
| Tery_1667 | isiA | -134 | 3.6 | AGTAATTGATCATACT | |
| Tery_0466 | gltS | -228 | 4.2 | TGTATCCTAGGCAACA | |
| Tery_0130 | urtA | -390 | 3.8 | AGTTACAAAAAAAACA | |
| Tery_4747 | gor | -208 | 3.9 | TGTAGTCGTAGATATA | |
| Tery_4747 | gor | -120 | 4.7 | TGTAACTAATTATACT | |
| Synechococcus elongatus PCC 7942 | |||||
| Synpcc7942_0442 | amt1 | -151 | 4.1 | TGTTACATCGATTACA | |
| Synpcc7942_1845 | cce_3797 | -27 | 4.3 | TGTATCCGTTGCTACC | |
| Synpcc7942_2107 | cynA | -67 | 4.4 | TGTAACGACGGCTACA | |
| Synpcc7942_2156 | glnA | -194 | 4.8 | TGTATCAgcTGTTACA | |
| Synpcc7942_0321 | glnB | -103 | 4.8 | TGTAGCAGTAACTACA | |
| Synpcc7942_1240 | nirA | -220 | 4.9 | TGTAGCAATTGCTACT | |
| Synpcc7942_1240 | nirA | -149 | 4.3 | AGTATCAATGATTACT | |
| Synpcc7942_1240 | nirA | -80 | 4.4 | TGTAGTTTCTGTTACC | |
| Synpcc7942_0127 | ntcA | -157 | 4.7 | AGTAGCAGTTGCTACA | |
| Synpcc7942_1241 | nirB | -153 | 4.3 | AGTAATCATTGATACT | |
| Synpcc7942_1241 | nirB | -82 | 4.9 | AGTAGCAATTGCTACA | |
| Synpcc7942_1845 | SYNPCC7002_A2101 | -27 | 4.3 | TGTATCCGTTGCTACC | |
| Synpcc7942_2158 | apcF | -214 | 4.8 | TGTAACAGCTGATACA | |
| Prochlorococcus marinus str. MIT 9313 | |||||
| PMT1853 | amt1 | -160 | 3.8 | TGTAACAAAATGAACT | |
| PMT0601 | glnA | -79 | 4.2 | GGTACCTGTTGCTACA | |
| PMT2229 | urtA | -146 | 4 | TGTTGCAACAGCTACC | |
| PMT2229 | urtA | -95 | 4.7 | TGTATCATTCACTACA | |
| Synechococcus sp. JA-3-3Ab | |||||
| CYA_0030 | fur | -66 | 3.6 | GCTATTATCAATTACA | |
| CYA_0570 | SYNPCC7002_A2395 | -139 | 3.9 | GGTAAGATAAAATACA | |
| CYA_0570 | SYNPCC7002_A2395 | -81 | 4.2 | CGTATCAAAGGCTACT | |
| CYA_1363 | glnA | -138 | 4.3 | CGTATCAGAAACTACA | |
| CYA_1508 | glnB | -74 | 4.5 | TGTATCCGTTTTTACA | |
| CYA_0612 | nirA | -72 | 3.9 | TGTAACTGCCAATACC | |
| CYA_1799 | ntcA | -181 | 4.7 | TGTAGCTCCTGCTACA | |
| CYA_0984 | ntcB | -89 | 4.2 | TGTAACGGTGTTTACA | |
| CYA_1920 | urtE | -248 | 3.9 | AGAAACAGAAGCTACA | |
| CYA_1924 | urtA | -272 | 3.7 | GGTATCCCGCGATACA | |
| Synechococcus sp. WH 8102 | |||||
| SYNW0253 | amt1 | -100 | 4.2 | TGTATCAATTAACACA | |
| SYNW0246 | SYNPCC7002_A1954 | -143 | 4.1 | TGTAACTTTGGTTGCA | |
| SYNW2487 | cynA | -103 | 4.1 | TGTAGCAAGTGAGACA | |
| SYNW2487 | cynA | -66 | 4.5 | AGTATCACCTGATACA | |
| SYNW2442 | urtA | -118 | 4 | TGTTGCAACAGCTACC | |
| Gloeobacter violaceus PCC 7421 | |||||
| gvip146 | glnA | -116 | 4 | CGTATCTCAGACTACA | |
| gvip212 | nirA | -146 | 4 | TGTATCTGGGGTTACG | |
| gvip454 | ntcA | -77 | 3.9 | AGTAGTCCCTAATACA | |
| gvip213 | ntcB | -46 | 4 | CGTAACCCCAGATACA | |
| glr3304 | fur | -116 | 3.9 | TGTAACAAATTGTAGA | |
| gll0880 | trxA | -379 | 3.6 | TGTATCTAGAACTAGC | |
| Thermosynechococcus elongatus BP-1 | |||||
| null | gifB | -175 | 4.4 | TGTTAAATTAGATACA | |
| amt1 | amt1 | -190 | 4.4 | TGTATAACGTGATACA | |
| tsr2448 | SYNPCC7002_A0076 | -63 | 4.1 | AGTATTGGATATTACA | |
| tlr1468 | SYNPCC7002_A2395 | -85 | 4.3 | TGTAGTTGAGTTTACA | |
| tlr0194 | tlr0194 | -111 | 4.2 | TGTAACCTATCTTACA | |
| tll0591 | glnB | -80 | 5.1 | TGTAGCTATTGCTACA | |
| tlr1349 | nirA | -82 | 4.6 | AGTAGCAAAATTTACA | |
| tlr1330 | nrrA | -138 | 4 | AGTATTATTCGTTACG | |
| null | ntcB | -122 | 3.9 | TGTATCAATCAACACA | |
| tlr1120 | urtA | -81 | 4 | TGTAGCCTAGCATACA | |
| tlr2286 | trxQ | -130 | 4 | AGTAGCAATGACAACA | |
| null | isiA | -195 | 3.8 | AGTTTCTGGAAATACA | |
| null | ndhF | -220 | 3.6 | GGTAACTTTTGCTATG | |
| null | gifB | -146 | 4.4 | TGTTAAATTAGATACA | |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |