Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ndhF gene

Properties
Regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Built upon 228 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cyanothece sp. PCC 8801
Position: -238
Score: 3.60444
Sequence: CGTATTATGAGTTAGA
Locus tag: PCC8801_4247
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: PCC8801_4248
Name: ecaB
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: PCC8801_4249
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Locus tag: PCC8801_4250
Name: cupA
Funciton: Carbon dioxide hydration protein
ndhF-ecaB-ndhD-cupA -238 3.6 CGTATTATGAGTTAGA PCC8801_4247
Nostoc sp. PCC 7120
Position: -260
Score: 4.03917
Sequence: TGTCTTATAAAATACA
Locus tag: alr4156
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: alr4157
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
ndhF-ndhD -260 4 TGTCTTATAAAATACA alr4156
Synechocystis sp. PCC 6803
Position: -244
Score: 3.9598
Sequence: TGTAACAAATAACACT
Locus tag: sll1732
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
ndhF -244 4 TGTAACAAATAACACT sll1732
Thermosynechococcus elongatus BP-1
Position: -220
Score: 3.58658
Sequence: GGTAACTTTTGCTATG
Locus tag: null
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: null
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Locus tag: tlr0906
Name: cupA
Funciton: Carbon dioxide hydration protein
ndhF-ndhD-cupA -220 3.6 GGTAACTTTTGCTATG null
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