Propagation of CcmR regulog to Cyanothece sp. PCC 8801

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. PCC 8801
Orthologous TF(s)	PCC8801_3406
Regulated genes	10

Built upon 72 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. PCC 8801*
	Locus tag	Position	Score	Sequence
Position: -174 Score: 5.4 Sequence: ATAGATAAATGTCTAT Locus tag: PCC8801_1249
	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_2939	-181	4	ATAGATCGATATATAT
Cyanothece sp. PCC 7425	Cyan7425_5063	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62090	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2134	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803	slr1512	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -46 Score: 5.2 Sequence: ATAGCTTTTAATCTAT Locus tag: PCC8801_1398
	PCC8801_1398	-46	5.2	ATAGCTTTTAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_1687
Ortholog function: Predicted membrane protein (COG3431)
Cyanothece sp. ATCC 51142	cce_1687	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_4921	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_1398	-46	5.2	ATAGCTTTTAATCTAT
		-14	4.2	ATAGAATAAATACAAT

Position: -56 Score: 4.8 Sequence: ATAGGCTTTAAGCTAT Position: -24 Score: 4.7 Sequence: ATAGTTTTTTGTATAT Locus tag: PCC8801_2762
	PCC8801_2762	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142	cce_1686	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3542	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2762	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2373	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2006	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1818	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -112 Score: 4.8 Sequence: ATTGTATTTAATCTAT Locus tag: PCC8801_3406
	PCC8801_3406	-112	4.8	ATTGTATTTAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142	cce_3731	-133	4.3	ATAGATTTATTTCAAC
		-101	4.8	ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801	PCC8801_3406	-144	4.4	ATAGAATTTAATCAAA
		-112	4.8	ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843	MAE_62070	-238	4.3	ATAGACAAAACTTTAT
		-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803	sll1594	-240	4.7	ATTGGCTTTATTCTAT
		-179	4.8	ATAGCCATAGGTCTAT

Position: -141 Score: 4.1 Sequence: ATAGTGAATAGTCAAT Locus tag: PCC8801_3519
	PCC8801_3519	-141	4.1	ATAGTGAATAGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpC
Ortholog function: Bicarbontate ABC transporter, ATP-binding protein 1
Cyanothece sp. ATCC 51142	cce_0303	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4923	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3519	-268	4.5	ATACATATTAAGCTAT
Gloeobacter violaceus PCC 7421	gvip282	-168	5.6	ATAGATTAATATCTAT
		-136	5	ATCGACTTTTCTCTAT
Microcystis aeruginosa NIES-843	MAE_20010	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1490	-186	4.9	ATTGACTTAGCTCTAT
Synechocystis sp. PCC 6803	slr0043	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -268 Score: 4.5 Sequence: ATACATATTAAGCTAT Locus tag: PCC8801_3521
	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -74 Score: 5 Sequence: ATAGACTTTTGACTAA Locus tag: PCC8801_3646
	PCC8801_3646	-74	5	ATAGACTTTTGACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpX
Ortholog function: Fructose-1,6-bisphosphatase II
Cyanothece sp. ATCC 51142	cce_3974	-74	5	ATAGACTTTTGACTAA
Cyanothece sp. PCC 8801	PCC8801_3646	-74	5	ATAGACTTTTGACTAA
Microcystis aeruginosa NIES-843	MAE_30020	-71	4.9	ATAGACTTTTGACTGT
Synechocystis sp. PCC 6803	slr2094	-71	5.6	ATAGACTTTTGACTAT

Position: -102 Score: 4.1 Sequence: ATAGCTATAAAACAAT Position: -71 Score: 5.6 Sequence: ATAGACTAAAGTCTAT Position: -8 Score: 5 Sequence: ATTGTTATATGTCTAT Locus tag: PCC8801_4247
	PCC8801_4247	-102	4.1	ATAGCTATAAAACAAT
		-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801	PCC8801_4247	-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421	gvip132	-139	5	ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843	MAE_15120	-71	4.9	ATTGACTAGAATCTAT
Nostoc sp. PCC 7120	alr4156	-245	5.9	ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0172	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1732	-204	3.9	ATTGTCGCTTGACTAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Cyanothece sp. PCC 8801

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --