Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcmR regulog to Synechococcus elongatus PCC 6301

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus elongatus PCC 6301
Orthologous TF(s) syc0243_c
Regulated genes 5
Built upon 72 sites [see more]
Predicted regulatory interactions in Synechococcus elongatus PCC 6301
Locus tag Position Score Sequence
Position: -34
Score: 5.7
Sequence: ATAGACTTAAATCTAT
Locus tag: syc0243_c
syc0243_c -34 5.7 ATAGACTTAAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425 Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421 gll1001 -34 5.2 ATAGAACTATGTCTAT
Nostoc sp. PCC 7120 all0862 -285 5.8 ATAGATTTTTATCTAT
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1310 -34 5.7 ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0171 -63 5 ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1 tlr2037 -42 5.1 ATAGAATTTCGTCTAT
Position: -277
Score: 3.8
Sequence: ATAGCTCTACATCAAT
Locus tag: syc2458_c
syc2458_c -277 3.8 ATAGCTCTACATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhF
Ortholog function: Na/H antiporter, subunit F
Cyanothece sp. ATCC 51142 cce_1683 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3545 -121 4.7 ATTTATAAATATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2377 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 ssr3409 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 ssr3409 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tsl1815 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -207
Score: 4.6
Sequence: ATAGACAGGAATCTAT
Locus tag: syc2461_c
syc2461_c -207 4.6 ATAGACAGGAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142 cce_2939 -181 4 ATAGATCGATATATAT
Cyanothece sp. PCC 7425 Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1249 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62090 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2134 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1475 -207 4.6 ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0470 -134 4.9 ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803 slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: -186
Score: 4.9
Sequence: ATTGACTTAGCTCTAT
Locus tag: syc2474_d
syc2474_d -186 4.9 ATTGACTTAGCTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0305 -299 4.9 ATAGATAAATACCTAT
Cyanothece sp. PCC 7425 Cyan7425_4925 -286 5.2 ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801 PCC8801_3521 -268 4.5 ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843 MAE_19990 -104 4.6 ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1488 -186 4.9 ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab CYA_0894 -185 4.2 ATAAACGGAAGTCTAT
-153 4.4 ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803 slr0040 -208 4.5 TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1 null -124 4.1 ATAGATTGTTTGCAAT
© 2009-2020 RegPrecise