Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Trichodesmium erythraeum IMS101

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Trichodesmium erythraeum IMS101
Orthologous TF(s) Tery_2023
Regulated genes 35
Built upon 228 sites [see more]
Predicted regulatory interactions in Trichodesmium erythraeum IMS101
Locus tag Position Score Sequence
Position: -88
Score: 3.3
Sequence: TGTATATTTCAAAATA
Locus tag: Tery_0071
Tery_0071 -88 3.3 TGTATATTTCAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -231
Score: 3.7
Sequence: AGTAGATAAATATAGA
Locus tag: Tery_0130
Tery_0130 -231 3.7 AGTAGATAAATATAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0398 -127 4.1 TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803 slr0447 -211 4.5 GGTATCCTATGCTACA
Cyanothece sp. PCC 7425 Cyan7425_2260 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06220 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1951 -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101 Tery_0130 -390 3.8 AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab CYA_1924 -272 3.7 GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1 tlr1120 -81 4 TGTAGCCTAGCATACA
Position: -228
Score: 4.2
Sequence: TGTATCCTAGGCAACA
Locus tag: Tery_0466
Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Nostoc sp. PCC 7120 alr4344 -265 3.5 TGGAAAAATTAAAACA
Trichodesmium erythraeum IMS101 Tery_0466 -228 4.2 TGTATCCTAGGCAACA
Position: -94
Score: 4.3
Sequence: AGTATTCAAAATTACA
Locus tag: Tery_0672
Tery_0672 -94 4.3 AGTATTCAAAATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -89
Score: 4.7
Sequence: AGTAGCTTCTGTTACA
Locus tag: Tery_0675
Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -199
Score: 4.1
Sequence: TGTTATATAAGCTACG
Locus tag: Tery_1068
Tery_1068 -199 4.1 TGTTATATAAGCTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -134
Score: 3.6
Sequence: AGTAATTGATCATACT
Locus tag: Tery_1667
Tery_1667 -134 3.6 AGTAATTGATCATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Iron-stress chlorophyll-binding protein
Nostoc sp. PCC 7120 all4001 -37 3.7 AGTATTTCTGGCAACA
Trichodesmium erythraeum IMS101 Tery_1667 -134 3.6 AGTAATTGATCATACT
Thermosynechococcus elongatus BP-1 null -195 3.8 AGTTTCTGGAAATACA
Position: -86
Score: 3.4
Sequence: AGTAATTATCAATAAA
Position: -40
Score: 3.5
Sequence: TGTATCATTGTCAATA
Locus tag: Tery_1958
Tery_1958 -86 3.4 AGTAATTATCAATAAA
-40 3.5 TGTATCATTGTCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Ferric uptake regulator, Fur family
Cyanothece sp. PCC 8801 PCC8801_0870 -380 3.4 TGTTTATGCTAAAACA
Microcystis aeruginosa NIES-843 MAE_37080 -118 3.7 AGTAATTTTTCATACT
Trichodesmium erythraeum IMS101 Tery_1958 -40 3.5 TGTATCATTGTCAATA
Position: -191
Score: 4.1
Sequence: TGTAATTTAGACAACA
Position: -110
Score: 4.6
Sequence: TGTAACTATATATACT
Locus tag: Tery_2891
Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_0729 -128 4.3 TGTAACATTTGTTATT
-71 4.1 AGTATTGGTGGATACA
Nostoc sp. PCC 7120 asr0064 -107 3.7 CGTATAGCAAAATACA
Trichodesmium erythraeum IMS101 Tery_2891 -191 4.1 TGTAATTTAGACAACA
-110 4.6 TGTAACTATATATACT
Thermosynechococcus elongatus BP-1 tsr2448 -63 4.1 AGTATTGGATATTACA
Position: -64
Score: 4.1
Sequence: TGTAGCTACTGATAAA
Locus tag: Tery_3368
Tery_3368 -64 4.1 TGTAGCTACTGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupL
Ortholog function: NiFe uptake hydrogenase, large subunit
Cyanothece sp. ATCC 51142 cce_1064 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3213 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3368 -64 4.1 TGTAGCTACTGATAAA
Position: -188
Score: 4.3
Sequence: AGTATCAAAAATAACA
Locus tag: Tery_3369
Tery_3369 -188 4.3 AGTATCAAAAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142 cce_1063 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3369 -188 4.3 AGTATCAAAAATAACA
Position: -250
Score: 4
Sequence: CGTAACACCCGATACA
Locus tag: Tery_3834
Tery_3834 -250 4 CGTAACACCCGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -156
Score: 4.3
Sequence: TGTAGTTATGGCTACC
Locus tag: Tery_3912
Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -27
Score: 4
Sequence: TGTATAAAATAACACA
Locus tag: Tery_4333
Tery_4333 -27 4 TGTATAAAATAACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: 14
Score: 4.1
Sequence: AGTTGCAAAAGATACT
Locus tag: Tery_4409
Tery_4409 14 4.1 AGTTGCAAAAGATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120 alr1525 -32 3.6 AGTAAAAAGAGTGACA
Position: -293
Score: 3.4
Sequence: GATAACTATTACTACG
Locus tag: Tery_4410
Tery_4410 -293 3.4 GATAACTATTACTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: -83
Score: 4.9
Sequence: AGTAGCATTTGATACA
Locus tag: Tery_4477
Tery_4477 -83 4.9 AGTAGCATTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -120
Score: 4.7
Sequence: TGTAACTAATTATACT
Locus tag: Tery_4747
Tery_4747 -120 4.7 TGTAACTAATTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gor
Ortholog function: glutathione reductase
Nostoc sp. PCC 7120 all4968 -48 4.1 AATAACAACTGTTACA
Trichodesmium erythraeum IMS101 Tery_4747 -208 3.9 TGTAGTCGTAGATATA
-120 4.7 TGTAACTAATTATACT
Position: -349
Score: 4.7
Sequence: TGTAGAATATGATACT
Position: -199
Score: 4
Sequence: TGTAAAATTTTGTACC
Locus tag: Tery_5068
Tery_5068 -349 4.7 TGTAGAATATGATACT
-199 4 TGTAAAATTTTGTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
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